Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1136
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   7.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.6  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 430 CISFHFHQQFSN*NLCFSFYFF 495
           C S HF Q F++  +   +YFF
Sbjct: 458 CPSIHFAQLFADRGMKVYYYFF 479


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 430 CISFHFHQQFSN*NLCFSFYFF 495
           C S HF Q F++  +   +YFF
Sbjct: 458 CPSIHFAQLFADRGMKVYYYFF 479


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 20/87 (22%), Positives = 34/87 (39%)
 Frame = +1

Query: 94  KSARHNHTFADAERLAEERLMAGLSDKHTDISNGPLQLGLENK*HLETGSLYKAMSSDHS 273
           K  R+     + E+L EER       +  +      +     + + ET    K  S D +
Sbjct: 248 KDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETS---KERSRDRT 304

Query: 274 YPESDCPCR*HAARSYTYGYSINNYKF 354
             E     +  ++ S  Y Y+ NNYK+
Sbjct: 305 ERERSKERKIISSLSNNYNYNNNNYKY 331


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 400 PFKLEGVTVTDVSPLQTYNYLS 335
           PFK +G+T+ +  P ++   +S
Sbjct: 538 PFKYQGITILEKKPSRSSTLVS 559


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,786
Number of Sequences: 438
Number of extensions: 4236
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)