Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1134
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   202   5e-53
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    54   2e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    49   6e-07
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    28   1.1  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   6.0  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   7.9  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.9  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   7.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   7.9  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  202 bits (492), Expect = 5e-53
 Identities = 98/178 (55%), Positives = 122/178 (68%), Gaps = 1/178 (0%)
 Frame = +1

Query: 82  NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 261
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 262 KTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 438
           K TA  +FK+L KYRPET                          +P  ++ G N V  L+
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143

Query: 439 EKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALT 612
           E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT   LA+T
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVT 201



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 617 VESGDRASFSKVVEAIKTNFNERYEELR 700
           V   D+   + +V A+  NF+ +Y+E R
Sbjct: 203 VREEDKNELASIVSAVDANFSAKYDESR 230


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = +1

Query: 403 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 570
           +R G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 403 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 582
           I  G   V K V K +  LV++A D+ P++++  +P LC    VPY     K  LG   +
Sbjct: 54  ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113

Query: 583 RKTCT-CLALTNGG 621
            K  T C+ +  GG
Sbjct: 114 TKRPTSCVMIVPGG 127


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 556 KSRLGALVHRKTCTCLALTNGGVW 627
           +SR G   H K  TCLA++N G W
Sbjct: 199 RSRRGENDHVKEITCLAISNDGRW 222


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 196 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 297
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 424  LCLCRIGWC 398
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 180 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 269
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 378 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 208
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 117 HWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQDYS 272
           ++  +  N  + Q+   A  YP+ +     SAS  S+P+     P T +  S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 406 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 528
           +SG+  +T+ +      +V I + +D +E    LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,357
Number of Sequences: 5004
Number of extensions: 51100
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)