Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1132
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.5  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   6.0  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    26   6.0  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   7.9  

>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 603 EKARENGNVCIYHLKRTCLNVTNVTGES-EKLW 698
           E  RE GN C+ HLK+  LN+ N    S +K W
Sbjct: 161 EVRRELGN-CLAHLKKGTLNIDNALQASLQKYW 192


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 428 TVYTFVMFFNLSFLVFSPRLLPTSYPCLYQQSQTWKXYSYLNF 556
           T+YT +  F++ +       L   +P LY++ +  K +SY NF
Sbjct: 867 TMYTMLPVFSIVYDRDVSEKLVFLFPELYKEMREQKCFSYKNF 909


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 688 SLSPVTFVTFKQVRFRW*IHTFPFS 614
           SL+P      +QVR+RW   +FPF+
Sbjct: 231 SLAPSISSGAEQVRYRWTYDSFPFT 255


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 178 SAHTVTLETSRIQCVRNS*IWIKENRRKRGKGEGK 74
           S H   +  S    V+ S   +  N+RKR KG+ K
Sbjct: 644 SVHNTPMSVSSTLSVKTSSSKVPRNKRKRRKGKSK 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,399
Number of Sequences: 5004
Number of extensions: 41504
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)