Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1132
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423...    29   4.7  
01_01_0249 + 2047793-2048561,2049861-2049896,2050068-2051012,205...    29   4.7  
11_01_0314 + 2339241-2339728,2342720-2343608                           28   6.2  
04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337     28   8.2  

>01_01_0571 -
           4233769-4234239,4234340-4234378,4234712-4234839,
           4235329-4235470,4235519-4235905,4236045-4236230,
           4236382-4236659,4236757-4236883,4237270-4237442,
           4237610-4237657,4237734-4237767,4237837-4237965,
           4238865-4238960,4239419-4239485,4240030-4240085,
           4240522-4240617,4241127-4242222,4243221-4243402
          Length = 1244

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 603 EKARENGNVCIYHLKRTCLNVTNVT 677
           E A +NG V  YH+ RTCL +   T
Sbjct: 661 EDALKNGEVLAYHVYRTCLRMDGQT 685


>01_01_0249 +
           2047793-2048561,2049861-2049896,2050068-2051012,
           2051215-2051264
          Length = 599

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 347 HRTSLHVSIASKISFALYCFDDSTTTIRS*YILLIVTNYT 228
           +R+SL ++     SF L+C  D   ++R   IL++  +YT
Sbjct: 47  NRSSLAIAACGHPSFELWCSRDGVASLRGSQILVLGIDYT 86


>11_01_0314 + 2339241-2339728,2342720-2343608
          Length = 458

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 523 TLLVETGIAGRKKARGENKKGKIEKHNKSINCVSYTFL 410
           T LV   +  RK+  G NK+G+     + +  V + FL
Sbjct: 83  TALVAAKVMDRKELEGRNKEGRARTEREILEAVDHPFL 120


>04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337
          Length = 516

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 529 SLTLLVETGIA-GRKKARGENKKGKIEKHNKSINC 428
           SLT L +TG    R+KA G  +K K   HN+  +C
Sbjct: 482 SLTFLAQTGTQRARRKASGILEKMKRTMHNRHCSC 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,250,788
Number of Sequences: 37544
Number of extensions: 251712
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)