Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1131
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    41   8e-05
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   1.0  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   3.1  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   3.1  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   4.1  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    25   5.4  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   7.1  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    24   9.4  
SPBC1685.12c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       24   9.4  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 41.1 bits (92), Expect = 8e-05
 Identities = 16/41 (39%), Positives = 28/41 (68%)
 Frame = +2

Query: 275 PEEFRGLGIRIEDDVLITDGDPXVLTDSCAKEVQDIQXIXR 397
           P+  +G+ IRIED V++ D  P VLT +  KE+++I+ + +
Sbjct: 446 PQWAQGIAIRIEDSVIVGDDKPFVLTSAAPKEIEEIEALKK 486


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 277 RHPGVVRPDRHEASCRIRHEENSKD-TNVDRSPIE 176
           RH    RP   EA  R RHE  SK+   V + P+E
Sbjct: 42  RHDRSERPSSREAGDRSRHERFSKEPLEVKKLPVE 76


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 127 PRRSPPKKQTHSTIAALLLAI 189
           P RS  ++QTHS+I + LLA+
Sbjct: 484 PIRSSKQEQTHSSIVSTLLAL 504


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -3

Query: 349 EHXRVPVRDEDVVFYTDTQAAELLRHPGVVRPDRHEASCRIRHEENSKDTNVDRSPIEER 170
           +H ++P++ ED++ + D             + D  E   R R EE  ++ N+DR+    R
Sbjct: 415 DHPKLPIKLEDIIIFVDPFEE--------WKKDEREKEKRKRQEE-EEENNLDRTSWTGR 465

Query: 169 QLS 161
            LS
Sbjct: 466 DLS 468


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +2

Query: 272 VPEEFRGLGIRIEDDVLITDGDPXVLTDSCAK 367
           +P+E   +GIRIED VL +D  P +LT+  AK
Sbjct: 419 IPDE---IGIRIEDAVLASD-VPILLTNFRAK 446


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 271 PGVVRPDRHEASCRIRH 221
           PGV+ PDR+E + R+RH
Sbjct: 405 PGVL-PDRYEEASRVRH 420


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 247 HEASCRIRHEENSKDTNVDRSP 182
           HE  C I+H E +K+     SP
Sbjct: 343 HELECFIQHHEYTKERTAQSSP 364


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 257 TDDTRVPEEFRGLGIRIEDDVLIT 328
           TD+ RVP  FR LG   E+  ++T
Sbjct: 467 TDNARVPMHFRVLGKYEEEFTIVT 490


>SPBC1685.12c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 117

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 96  YVECSVRCNAPATLSAEETDS 158
           +++ +++CNA AT++A  TD+
Sbjct: 90  FLQDAMQCNATATMTATPTDA 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,971
Number of Sequences: 5004
Number of extensions: 23515
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)