Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1131
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 46 2e-05
03_05_0635 + 26303130-26303570 29 1.3
04_04_1038 - 30319139-30319357,30319544-30319714,30319803-303198... 29 2.3
06_03_0173 - 17519768-17521285 28 4.0
05_03_0149 - 8935172-8935254,8935792-8937319 27 5.3
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 27 5.3
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 27 9.2
07_01_0480 + 3616123-3617506,3618033-3618166,3618578-3618818,361... 27 9.2
03_02_0271 + 7029410-7029949,7030054-7030566 27 9.2
>12_02_0786 +
23139854-23139901,23140054-23140122,23140531-23140544,
23140603-23140675,23140875-23140979,23141817-23142080,
23142159-23142251,23142381-23142587,23143155-23143258,
23143436-23143502,23143576-23143683,23143943-23144033,
23144123-23144193,23144421-23144549,23144659-23144766
Length = 516
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +2
Query: 245 VPIRTDDTRVPEEFRGLGIRIEDDVLITDGDPXVLTDSCAKEVQDI 382
VPI ++ P+ +RG+GIRIED+VLIT+ VLT S KE+ I
Sbjct: 451 VPILKENA--PDRYRGIGIRIEDEVLITESGHEVLTASVPKEISHI 494
>03_05_0635 + 26303130-26303570
Length = 146
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 269 RVPEEFRGLGIRIEDDVLITDGDP 340
R+P GLG+R+E+D L G P
Sbjct: 56 RIPSGVEGLGVRVEEDFLSGSGGP 79
>04_04_1038 -
30319139-30319357,30319544-30319714,30319803-30319850,
30319978-30320166
Length = 208
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 109 PLGATLPRRSPPKKQTHSTIAAL-LLAIYPRSYLCYFPRAEFGTRPRADP 255
PLG P PP++ S + L + A S L Y PRA P DP
Sbjct: 15 PLGNPAP--PPPRRWCRSPLCPLPVSAATAGSRLAYIPRASAAANPHPDP 62
>06_03_0173 - 17519768-17521285
Length = 505
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 289 AELLRHPGVVRPDRHEASCRIRHEENSKDTNVDRSP 182
AELLR+PGV+ R E + E ++ +V R P
Sbjct: 315 AELLRNPGVMAKARAEIDAALGGREAVEEADVARMP 350
>05_03_0149 - 8935172-8935254,8935792-8937319
Length = 536
Score = 27.5 bits (58), Expect = 5.3
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +1
Query: 79 RVFFVRMSSAPLGATLPRRSPPKKQTHSTIAALLLAIYPRSYLCYFPRAEFGTRPRADP 255
R F +S P A + R++PP + S A+LLLA PR P RP DP
Sbjct: 113 RAFSTAAASRPQWAMI-RQAPPVRSP-SPHASLLLAEPPRDSYLLVPDHLIDRRPGPDP 169
>01_06_1729 +
39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 27.5 bits (58), Expect = 5.3
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +1
Query: 22 TLAEQLEPVSYCCVVPVADRVFFVRMSSAPLGATLPRRSPPKKQTHSTIAALLLAIYPRS 201
T AE +PVSY + A + + PL PPKK T S ++ A++P
Sbjct: 31 TAAEFADPVSYILKIEPAAAPYGICKVVPPLPP------PPKKATFSNLSRSFAALHPDD 84
Query: 202 YLCYFP--RAEFGTRPRADPDG 261
FP + G PR G
Sbjct: 85 RSPSFPTRHQQVGLCPRRTRPG 106
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +3
Query: 150 TDSFDNCRSSIGDLSTFVSLLFSSCRIRHEASCRSGRTTP 269
+++ + ++++ L+TF L R++H R G +TP
Sbjct: 976 SENRQHAKAALSALNTFAETLLFLARMKHTGMLRGGPSTP 1015
>07_01_0480 +
3616123-3617506,3618033-3618166,3618578-3618818,
3618912-3619120,3619234-3619265,3619363-3619474,
3619609-3619890
Length = 797
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 278 PAPGCRPSGSARGLVPNSARGK*QRYERG*IANRRAAIV 162
P+P C+ A G+VP+ AR K G +A AA +
Sbjct: 377 PSPFCKNQAIAVGIVPDQARRKPSGARSGLVAGVVAAAI 415
>03_02_0271 + 7029410-7029949,7030054-7030566
Length = 350
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 239 GLVPIRTDDTRVPEEFRGLGIRIED 313
GLVP T TR PEE G+G+ +E+
Sbjct: 87 GLVPPTTAVTRPPEE-EGVGVTVEE 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,889,170
Number of Sequences: 37544
Number of extensions: 184689
Number of successful extensions: 606
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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