Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1131
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063007-3|AAC16431.2|  362|Caenorhabditis elegans Hypothetical ...    32   0.22 
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    28   2.7  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AF063007-3|AAC16431.2|  362|Caenorhabditis elegans Hypothetical
           protein R119.2 protein.
          Length = 362

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +2

Query: 278 EEFRGLGIRIEDDVLITD-GDPXVLTDSCAKEVQDIQXI 391
           +EFRG+G RIEDDV  ++ G   +LT +  ++  +IQ +
Sbjct: 319 KEFRGIGYRIEDDVATSEAGGIELLTAAVPRDPIEIQRL 357


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 250 RHEASCRIRHEENSKDTNVDRSPI 179
           RHE+ CR+ +E  S + ++ R+P+
Sbjct: 433 RHESLCRLSNESGSSNRSIPRAPL 456


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/58 (24%), Positives = 22/58 (37%)
 Frame = +1

Query: 4    GTPASATLAEQLEPVSYCCVVPVADRVFFVRMSSAPLGATLPRRSPPKKQTHSTIAAL 177
            G P S  + +   P  Y C   ++        +  P+G T P +   +KQ     A L
Sbjct: 1167 GEPQSCAIGQSTCPSGYSCQRAISGAQLCCTTNDEPVGPTTPTKGCTEKQVEVEGACL 1224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,934,935
Number of Sequences: 27780
Number of extensions: 141905
Number of successful extensions: 444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)