Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1131
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   0.88 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.88 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 403 CFPPYXLYILHLLGAGVGEHXRVPVRDEDVV 311
           C P Y +YI       + E  R  +R ED V
Sbjct: 542 CIPGYMIYIWFTTSGTISEKFRKLIRIEDDV 572


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 403 CFPPYXLYILHLLGAGVGEHXRVPVRDEDVV 311
           C P Y +YI       + E  R  +R ED V
Sbjct: 595 CIPGYMIYIWFTTSGTISEKFRKLIRIEDNV 625


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 278 EEFRGLGIRIEDDVLITDGDPXVLTDSCAKEVQDIQXIXRETGLL 412
           E  R  GIR+E D ++T      ++   + +  D+    RET +L
Sbjct: 420 ERQREYGIRVERDPILTPPSSNPVSPVPSPDPLDLAIPVRETLIL 464


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 278 PAPGCRPSGSARGLVPNSARG 216
           P+P   P    RG  PN ++G
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQG 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,589
Number of Sequences: 438
Number of extensions: 2054
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)