Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1129
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1023 + 8840754-8842988,8843189-8843362                           27   8.7  
02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091     27   8.7  

>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 169 ANYQDDQSRNGKQKIEAKHEVLYTGHSTFESHCYSIK 59
           A +Q++     ++K+E    ++ TG  T   H YS+K
Sbjct: 755 AKHQEEILNCNQRKLEVMDSIMLTGKFTHLQHIYSVK 791


>02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091
          Length = 889

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 519 YRXHCKSVCMISMVFWTF-LSTGY*VMEAFRLRITESSKSVC 397
           Y+ HC + C    + + F +  G    E FRL  TE + +VC
Sbjct: 308 YKEHCSTSCGDMKIPFPFGVEEGCFANERFRLNCTEGNLTVC 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,720,564
Number of Sequences: 37544
Number of extensions: 313011
Number of successful extensions: 780
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)