Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1129
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    72   4e-13
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    63   1e-10
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    37   0.013
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    33   0.16 
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    32   0.27 
AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    29   1.9  
U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z66521-7|CAA91401.2|  387|Caenorhabditis elegans Hypothetical pr...    29   3.3  
X98132-1|CAA66831.1|  387|Caenorhabditis elegans N-acetyllactosa...    29   3.3  
Z49967-9|CAA90256.1|  328|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z81072-4|CAB03018.2|  327|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 1/167 (0%)
 Frame = +2

Query: 80  LEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFT-DENFYKXXXXXXXXX 256
           +EGG++ VKYL+F  NL+  + GL ++IVG   ++     ++   DE             
Sbjct: 2   VEGGVTIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERL--ATPILLLVI 59

Query: 257 XXXXXXXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLN 436
                      CCGA++EN+C+ ++F+V L ++   E+A  I GY  H      +   L 
Sbjct: 60  GSLCTLLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQ 119

Query: 437 ASITQYPVDKNVQKTIDIIQTDLQXLRYKQSRPTGPITVLPIPSTCC 577
             + +Y   + V+   D      +      S  +  +T   IP +CC
Sbjct: 120 TGMVRYHESRGVESAWDKTHQLFECCGVTNS--SDWLTFTTIPDSCC 164


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
 Frame = +2

Query: 98  CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDE--NFYKXXXXXXXXXXXXXX 271
           CVKY +F FN++F + G  +L+ G+ A+I    ++N   +    Y               
Sbjct: 37  CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDPTWPLLIVGFLTF 96

Query: 272 XXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQ 451
                 C G+++EN   +  +S  L ++ +AE + G+  Y     L++ +   LN  +  
Sbjct: 97  IIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVVG 156

Query: 452 YPVDKNVQKTIDIIQ 496
           Y  D ++Q  ID +Q
Sbjct: 157 YRDDPDLQLLIDSMQ 171


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 5/140 (3%)
 Frame = +2

Query: 92  MSCVKYLMFCFNLLFAITGLIILIVGI----RAEINSYPYMNFTDENFYKXXXXXXXXXX 259
           ++ ++ + F FN  F ++G+++  +GI        + +  ++ T    ++          
Sbjct: 5   VNALRIVTFLFNFAFWLSGVVVFGLGIWLLFDPAASDFFALHSTHPGAFRYVGWFLVGAG 64

Query: 260 XXXXXXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNA 439
                     C GA K N C +  F   L++ F  ELA  +  + K   ++  V  ++  
Sbjct: 65  AIIILVGYFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYD 124

Query: 440 SI-TQYPVDKNVQKTIDIIQ 496
           +I  +Y  +   +   D +Q
Sbjct: 125 TIRNRYSSETAFKDAFDTVQ 144


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 71  TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 205
           TM L      +K+ +F FNL+F + GLI L +G+   ++ Y   N
Sbjct: 8   TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
 Frame = +2

Query: 293 CGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI-------TQ 451
           CGAV  +  +++ F +FL+  F+A++A+G    + + D   SV  N+   +       T 
Sbjct: 46  CGAVNRSRFLLLAFVMFLIGTFLADVAMGTLS-LFYKDKVYSVKENVREIVKSKYGVMTS 104

Query: 452 YPVDKNVQKTIDIIQ 496
            P +K V + ID +Q
Sbjct: 105 EPENKMVTEFIDKLQ 119


>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +2

Query: 296 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSV 421
           GAV  +  ++  + +F++I+F+ E+A+GI   +K   +  +V
Sbjct: 91  GAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTV 132


>U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical
           protein T22B7.7 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 94  HSTFESHCYSIKYYRQIVLLRNKMIHTSANK 2
           H T  SH Y +  YR I+ LR K+  TS NK
Sbjct: 143 HQTSLSHGYGLSPYRDII-LRGKVTWTSENK 172


>Z66521-7|CAA91401.2|  387|Caenorhabditis elegans Hypothetical
           protein W02B12.11 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 302 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 478
           ++ +HC+I +FS   LIIFVA   +     ++++ L D   R + A+  Q   V+ NVQ+
Sbjct: 1   MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58

Query: 479 T 481
           +
Sbjct: 59  S 59


>X98132-1|CAA66831.1|  387|Caenorhabditis elegans
           N-acetyllactosamine synthase protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 302 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 478
           ++ +HC+I +FS   LIIFVA   +     ++++ L D   R + A+  Q   V+ NVQ+
Sbjct: 1   MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58

Query: 479 T 481
           +
Sbjct: 59  S 59


>Z49967-9|CAA90256.1|  328|Caenorhabditis elegans Hypothetical
           protein F54C9.11 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +3

Query: 453 IR*TRTSRRPLISYKQTYNXCGINSXGRLGRSRFCPYRARAAPPXQ 590
           IR  R    PL   K +   C + +      SRFCPYR R     Q
Sbjct: 260 IRENRVQLEPLNELKPSVRICALTNA-----SRFCPYRVRTGDEEQ 300


>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 91   STFESHCYSIKYYRQIVLLRNKMIHTSAN 5
            +TF S C S K   ++  + NKM+H +A+
Sbjct: 1941 ATFRSDCISQKISHRLYRIVNKMVHNNAD 1969


>Z81072-4|CAB03018.2|  327|Caenorhabditis elegans Hypothetical
           protein F30A10.5 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -1

Query: 189 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPPSRAIVI---QLNITAKLY 40
           +F   L P +  + P++   +  QN+R    +IP   AI I   QL +   LY
Sbjct: 54  KFYKILEPGLNFLLPIIDKIKFVQNLREIAIEIPEQGAITIDNVQLRLDGVLY 106


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 314 HCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYP 457
           H + +  S  LLII  A    G+   + H   +D V+RN+N  I Q P
Sbjct: 568 HAIRLIRSGGLLIINQALNGGGVMSSIDHMTNDDRVIRNMNIRIKQDP 615


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,340,638
Number of Sequences: 27780
Number of extensions: 268304
Number of successful extensions: 910
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)