Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1126
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    35   0.011
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    35   0.011
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    30   0.40 
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   5.0  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   8.7  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   8.7  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 10  AKRCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQCKTSLVGKGFITDGQDIICPEC 183
           A  CT+C   I        +S  D + H +CF C  C+  ++   F  D + I C +C
Sbjct: 75  AHTCTACRMRIKDYA---LMSGYDSY-HRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128



 Score = 32.7 bits (71), Expect = 0.057
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +1

Query: 67  ISFEDRHWHNDCFICAQCKTSLVGKGFI----TDGQDIICPECA 186
           ISF    WH DCF C +C   L     +    +DG+  +C  CA
Sbjct: 33  ISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRP-VCSSCA 75


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +1

Query: 10  AKRCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQCKTSL--VGKGFITDGQ-DIICPE 180
           ++R   C K    +  T  + F  + WH+DCF C  C   L    + F  D Q  I C  
Sbjct: 18  SERTCFCIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKL 77

Query: 181 C 183
           C
Sbjct: 78  C 78


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 85  HWHNDCFICAQCKTSLVGKGFI 150
           H  + C++CA+CKT L  KG +
Sbjct: 8   HLKSRCYVCAKCKTHLAFKGHL 29


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 439 HRTNVGPALAKVKFVSDVVNLFARGVL 359
           HR+  G AL+ VK+ S+   +F +G+L
Sbjct: 428 HRSVYGSALSYVKYTSNRAGMFFKGLL 454


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 287 KHLSYINCIACE-GWSDA 237
           KHL+++NCI C   W++A
Sbjct: 209 KHLAHVNCINCNTPWANA 226


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 120 QDLARRQGLHHRRTGHH 170
           Q + R+ GLHH + GHH
Sbjct: 213 QFIFRKLGLHHGKHGHH 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,253
Number of Sequences: 5004
Number of extensions: 43302
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)