Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1126
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 35 0.079
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 34 0.14
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 33 0.18
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 31 0.98
07_01_0611 + 4524866-4525047,4525406-4525468,4525701-4525761,452... 31 1.3
07_01_1105 - 10173039-10173156,10173715-10173716,10174550-101745... 30 2.3
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 29 3.0
06_01_0847 - 6451525-6451678,6452870-6453066,6454300-6454591,645... 29 5.2
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 28 6.9
03_05_0786 + 27691451-27691688,27692376-27692479,27692600-276926... 28 6.9
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 28 6.9
01_06_1748 + 39632040-39632065,39632748-39633051,39633147-396331... 28 6.9
05_06_0071 + 25355853-25356095,25356183-25356239,25356848-253570... 28 9.1
04_01_0148 + 1710369-1710531,1711821-1712279,1712769-1712915,171... 28 9.1
02_05_0748 - 31463559-31464764 28 9.1
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 34.7 bits (76), Expect = 0.079
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 10 AKRCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQC 120
++ C C PI G RF+S D WH CF C C
Sbjct: 254 SRTCAGCKNPI---GHGRFLSCMDSVWHPQCFRCFAC 287
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +1
Query: 4 LFAKRCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQCKTSLVGKGFITDGQDIICPEC 183
+F+ +C + IG RF+S WH +CF C C + F G C
Sbjct: 550 MFSSGFRTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTC 609
Query: 184 AKQK 195
K++
Sbjct: 610 YKER 613
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 19 CTSCTKPITGIGGTRFISFEDRHWHNDCFICAQC 120
C C PI G RF+S D WH CF C C
Sbjct: 178 CAGCKTPI---GQGRFLSCMDSVWHPQCFRCFAC 208
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +3
Query: 72 VRRQTLAQRLLHLRAVQDLARRQGLHHRRTGHHLSRVRQAE 194
V+ + L L HLR A R+G HH HH RVR+AE
Sbjct: 11 VQERRLGVLLSHLRPCAPPAARRGNHHHH--HHDLRVREAE 49
>07_01_0611 +
4524866-4525047,4525406-4525468,4525701-4525761,
4526212-4526304,4526372-4526489,4527003-4527105,
4527342-4527525,4527974-4528087
Length = 305
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Frame = -1
Query: 183 ALGTDDVLSVGDEALADERGLA----LRADEAVVVPV--SVFERDEAGAADTCNGLGARS 22
ALG D++ V DE L DE GLA ++A E V ++++EA AA G +
Sbjct: 185 ALGEDEMPDVKDETLPDEEGLARPVVVKAVEEFKASVYGENYDQEEAEAAAAKAGASKKR 244
Query: 21 AALSE 7
AL++
Sbjct: 245 KALTD 249
>07_01_1105 - 10173039-10173156,10173715-10173716,10174550-10174584,
10174696-10174765,10175163-10176707,10176770-10178062
Length = 1020
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = -2
Query: 308 YVRCTSQKHLSYINCIACEGWSDARAEALKRDRCIYMSFCLAHSGQMMSCPSVMKPLPTS 129
Y + + L + + A E WS + E + Y+S + G++ P+ P
Sbjct: 878 YFAFPALESLKFRDMGAWEEWSGVKDEHFPELK--YLS--IVRCGKLKVLPNFTSG-PKQ 932
Query: 128 EVLHCAQMKQSLCQCLSSNEMKRVPP 51
+ +C ++ Q LCQ + N M+ +PP
Sbjct: 933 RIRNCEKLLQPLCQNIHWNLMEYIPP 958
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 657 TDVLTATLFSLLAGGFSPKSIL 722
+D L ATLF +L GG SPK +L
Sbjct: 1579 SDHLRATLFDVLLGGASPKQVL 1600
>06_01_0847 -
6451525-6451678,6452870-6453066,6454300-6454591,
6454622-6454654,6454869-6455102,6455204-6455259,
6455552-6456754
Length = 722
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -1
Query: 234 SGSVEARQVYLHELLLGALGTDDVLSVGDEALADERGLALRADE---AVVVPVSVFERDE 64
+GS +VY ++LL+G G ++ + + + D+R AL DE A +P E DE
Sbjct: 289 TGSSTVPKVYFNDLLIG--GLTELKKMEESGILDDRTDALFKDEPSSAAPLPPLPGEDDE 346
Query: 63 AGA 55
+G+
Sbjct: 347 SGS 349
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 13 KRCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQCKTSL 132
++C SC + + + ++ + R +H CF C CK +L
Sbjct: 11 QKCDSCGRTVYPV---EELAADGRVYHRPCFRCTHCKATL 47
>03_05_0786 +
27691451-27691688,27692376-27692479,27692600-27692671,
27693231-27693404,27693603-27693726,27695154-27695200,
27695381-27695593
Length = 323
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 305 VRCTSQKHLSYINCIACEGWSDAR-AEALK 219
+RC S KHL I+ + CEGWS + A ALK
Sbjct: 279 LRCAS-KHLKDISGMDCEGWSLLKIATALK 307
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 49 IGGTRFISFEDRHWHNDCFICAQCK 123
IG ++S +WH CF C+ C+
Sbjct: 121 IGHGHYLSCLGMYWHPQCFRCSSCR 145
>01_06_1748 +
39632040-39632065,39632748-39633051,39633147-39633192,
39633228-39633314,39634083-39634285
Length = 221
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = -1
Query: 171 DDVLSVGDEALADERGLALRADEAVVVPVSVFERDE 64
+D + G+E A+E G+ +D+ +VP V+++++
Sbjct: 184 EDDFNSGEEDEANEEGIDFESDKDEIVPTKVYDQED 219
>05_06_0071 +
25355853-25356095,25356183-25356239,25356848-25357069,
25357143-25357227,25357993-25358083,25358172-25358336,
25358583-25358699,25358773-25358848,25359940-25360102,
25360184-25361064
Length = 699
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 81 QTLAQRLLHLRAVQDLARRQGLHHRRTGHHLSRVRQAEAHVNTPVSLQRFRSRIAPS 251
+T R++ +V A + GL GH +S+ + + V++P S+ F AP+
Sbjct: 514 RTQNDRVVSANSVHRSAAQSGLLASTLGHPISQFTLSSSKVSSPSSVLMFNQATAPN 570
>04_01_0148 +
1710369-1710531,1711821-1712279,1712769-1712915,
1713004-1714170,1714378-1714430
Length = 662
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 164 SCPSVMKPLPTSEVLHCAQMKQSLCQCLSSNEMKRVPP 51
SC S+ P P + + C+ K+ L C S+ + +PP
Sbjct: 68 SCGSMSIPFPFALLSACSGSKRFLLNCTSNKTLIGIPP 105
>02_05_0748 - 31463559-31464764
Length = 401
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 91 HNDCFICAQCKTSLVGKGFITDGQDII 171
HN+CF+C+ ++ VG + G++I+
Sbjct: 143 HNECFMCSDKESLAVGTELLVFGKEIL 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,297,529
Number of Sequences: 37544
Number of extensions: 288417
Number of successful extensions: 840
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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