Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1126
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   4.0  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   4.0  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   4.0  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   4.0  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +2

Query: 215 LASTLPLSHRSIPHTQYNLYMTNVFVMCSE 304
           + S  P   R++   +Y+L++TN+++   E
Sbjct: 901 VVSPPPTKRRTMKVVKYHLFLTNLYIQMRE 930


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +2

Query: 215  LASTLPLSHRSIPHTQYNLYMTNVFVMCSE 304
            + S  P   R++   +Y+L++TN+++   E
Sbjct: 939  VVSPPPTKRRTMKVVKYHLFLTNLYIQMRE 968


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 350 FRKQDTSSEKIYDITDKF 403
           +RK+D   EK+Y+  +KF
Sbjct: 12  YRKKDRQYEKLYNEKEKF 29


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 350 FRKQDTSSEKIYDITDKF 403
           +RK+D   EK+Y+  +KF
Sbjct: 12  YRKKDRQYEKLYNEKEKF 29


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 350 FRKQDTSSEKIYDITDKF 403
           +RK+D   EK+Y+  +KF
Sbjct: 12  YRKKDRQYEKLYNEKEKF 29


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 350 FRKQDTSSEKIYDITDKF 403
           +RK+D   EK+Y+  +KF
Sbjct: 12  YRKKDRQYEKLYNEKEKF 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,332
Number of Sequences: 438
Number of extensions: 3214
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)