Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1125
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 86 6e-18
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 28 1.6
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 2.9
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 27 3.8
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 27 3.8
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 26 5.0
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc... 26 6.6
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 25 8.7
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 8.7
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 85.8 bits (203), Expect = 6e-18
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 8/115 (6%)
Frame = +1
Query: 166 SSQEPDVLFEALNNAGIVTLNRPKALNSLNTSMVSKLLPQLQEWEKSK--SLVIIKGAGE 339
+S VL+E+ N A I TLNRPK LN++N M+ +LP+L E+S ++I+KG G
Sbjct: 52 TSSNDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNG- 110
Query: 340 KAFCAGGDVKAAIDKIEGPRF------FHTEYNVNFLIGNYKIPYIAFINGITMG 486
++F +GGD+KAA I+ + F EY ++ + Y+ P +A +NGITMG
Sbjct: 111 RSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMG 165
Score = 46.8 bits (106), Expect = 3e-06
Identities = 29/75 (38%), Positives = 37/75 (49%)
Frame = +2
Query: 485 GGGLGLSVHGRYRVATEKTLIAMPETKIGLFPDVGGXXXXXXXXXXXWDCT*G*LVTDXR 664
GGG GL++H +R+A E T+ AMPET IG F DV + G +
Sbjct: 165 GGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAA-SFFFSRLPGYFGTYLGLTSQIVK 223
Query: 665 *XTL*KLGIATHFVP 709
+ GIATHFVP
Sbjct: 224 GYDCLRTGIATHFVP 238
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 4 RPELLRIEYLKFNDTIRFTFNTTCCEEILKAYSLQMYSLIKLKQATLPLLR 156
RP R+ Y KF D N CC+ + Y +M + + TL L+R
Sbjct: 542 RPPAKRVNYQKFGDNFSEIGNPFCCDWV---YLNEMVKASRDEDKTLQLVR 589
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 247 SLNTSMVSKLLPQLQEWEKSKSLV 318
+L++S +S+L PQL+EW SK V
Sbjct: 703 ALSSSPLSELHPQLREWFSSKQSV 726
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 142 LPLLRRTMS-SQEPDVLFEALNNAGIVTLNRPKALN 246
LP++ T+ S PDV+ N+AGI L + +N
Sbjct: 187 LPIIAATIQLSDLPDVILNFYNSAGITPLESSRLIN 222
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = -1
Query: 588 PTSGNSPILVSGMAINVFSVATLYLPWTESPRPPPHCD--SIYKCDIWDFIVSNQEINIV 415
PT+ P+ + +A+N S A +++ T+S C S+Y WD ++++Q +
Sbjct: 241 PTTTEDPV-IQKLALN--SDANIFI--TDSILSLLMCSTRSVYP---WDIVITHQSGKLF 292
Query: 414 FRMEEPRPFDFV 379
F E PFD++
Sbjct: 293 FDKREGGPFDYL 304
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 414 FRMEEPRPF-DFVYGSFHI 361
FRM+EP PF D VYG I
Sbjct: 180 FRMKEPSPFTDLVYGKIAI 198
>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
Sen34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 403 FHTEYNVNFLIGNYKIPYIAFINGITMGRRSWTLSPWQIQSSNREDIN 546
+H+ Y VN + +IP + I G +G + W I SN +IN
Sbjct: 213 YHSHYLVNSYKWDQEIPVLFLIGGGRLG--TAVKKTWLIGGSNDRNIN 258
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 70 TCCEEILKAYSL--QMYSLIKLKQATLPLLRRTMSSQEPDVLFE 195
T C +I+K ++ IKLKQ L L R + P +FE
Sbjct: 237 TLCLKIIKGILTLDELQKAIKLKQTELDKLERRLYRPSPQNIFE 280
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 594 DPPTSGNSPILVSGMAINVFSVATLYLPWTESPRP 490
DP +SP+ G++IN S Y P+P
Sbjct: 579 DPSAKASSPVTSKGVSINEKSAVNNYATPLSKPQP 613
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,414
Number of Sequences: 5004
Number of extensions: 62362
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -