Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1125
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.1  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   9.3  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 558 SGMAINVFSVATLYLPWTESPRPP 487
           SGM    FS+A LY P T+  + P
Sbjct: 137 SGMFTTAFSIAVLYRPDTKYMKFP 160


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 558 SGMAINVFSVATLYLPWTESPRPP 487
           SGM    FS+A LY P T+  + P
Sbjct: 137 SGMFTTAFSIAVLYRPDTKYMKFP 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 227 IDPKH*IPSTHLWCQNYYHNFKNGRNQS 310
           +D K   P  + +  NY+++  NG N S
Sbjct: 126 LDQKFIFPQENNYNDNYFYSKSNGSNSS 153


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 364 HHHQHRKLFLQH 329
           HHH H+   LQH
Sbjct: 352 HHHHHQTQSLQH 363


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 595 ISFYLVYKLILGLYLRL 645
           ISFY+   ++LG+Y RL
Sbjct: 199 ISFYVPCIVMLGIYCRL 215


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 239 ALGRLRVTMPALFNASNKTSGSCED 165
           ALG   +  P +   +N  SGS ED
Sbjct: 413 ALGAAALVAPGMEEPTNTASGSNED 437


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 506 LRVQDLLPIVIPFINAIYGIL 444
           L ++ ++P+V+  I AIYG++
Sbjct: 50  LIMKSIIPVVMAGIIAIYGLV 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,236
Number of Sequences: 438
Number of extensions: 4591
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)