Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1124
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   493   e-142
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   478   e-137
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   385   e-109
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   349   2e-98
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    38   1e-04
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.3  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  493 bits (1216), Expect = e-142
 Identities = 232/241 (96%), Positives = 234/241 (97%)
 Frame = +3

Query: 21  HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 200
           HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE
Sbjct: 7   HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 66

Query: 201 RERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 380
           RERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG
Sbjct: 67  RERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 126

Query: 381 ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPA 560
           ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPA
Sbjct: 127 ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPA 186

Query: 561 AVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEXKADGKCLIEALDAILPPXRPTDKPL 740
           AVAFVPISGWHGDNMLE S+KMPWFKGW VERKE K +GKCLIEALDAILPP RPTDK L
Sbjct: 187 AVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDKAL 246

Query: 741 R 743
           R
Sbjct: 247 R 247


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  478 bits (1178), Expect = e-137
 Identities = 224/241 (92%), Positives = 230/241 (95%)
 Frame = +3

Query: 21  HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 200
           HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE
Sbjct: 7   HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 66

Query: 201 RERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 380
           RERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG GEFEAG
Sbjct: 67  RERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAG 126

Query: 381 ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPA 560
           ISKNGQTREHALLAFTLGVKQLIVGVNKMD T+PPYSE RFEEIKKEVSSYIKKIGYN A
Sbjct: 127 ISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTA 186

Query: 561 AVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEXKADGKCLIEALDAILPPXRPTDKPL 740
           +VAFVPISGWHGDNMLEPS K PW+KGW+VERK+  ADGK LIEALDAILPP RPTDK L
Sbjct: 187 SVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRPTDKAL 246

Query: 741 R 743
           R
Sbjct: 247 R 247


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  385 bits (947), Expect = e-109
 Identities = 181/190 (95%), Positives = 183/190 (96%)
 Frame = +3

Query: 174 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 353
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 354 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 533
           AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 534 IKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEXKADGKCLIEALDAILP 713
           IKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKE K +GKCLIEALDAILP
Sbjct: 121 IKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILP 180

Query: 714 PXRPTDKPLR 743
           P RPTDK LR
Sbjct: 181 PTRPTDKALR 190


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  349 bits (857), Expect = 2e-98
 Identities = 163/171 (95%), Positives = 165/171 (96%)
 Frame = +3

Query: 222 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 401
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 402 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPI 581
           REHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 582 SGWHGDNMLEPSTKMPWFKGWQVERKEXKADGKCLIEALDAILPPXRPTDK 734
           SGWHGDNMLE S+KMPWFKGW VERKE K +GKCLIEALDAILPP RPTDK
Sbjct: 121 SGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDK 171


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 36/117 (30%), Positives = 52/117 (44%)
 Frame = +3

Query: 261 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 440
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 441 QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE 611
            +IV +NK+D       + ++E  K  +   I+++G     +  V IS   G N+ E
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYELAKHGI--VIEELG---GEIQCVKISALKGINLRE 298



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 21  HINIVVIGHVDSGKST 68
           H  + ++GHVD GK+T
Sbjct: 145 HPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
          methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 24 INIVVIGHVDSGKST 68
          INI  IGHV  GKST
Sbjct: 43 INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 246 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 347
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 246 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 347
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 623 FG*RLQHVVSVPSRNGHESDSSWV 552
           FG  L H++ V  +N   + + WV
Sbjct: 35  FGLSLHHIIDVDEKNQILTTNCWV 58


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 466 WIPLNHHTVSPDLRKSRRKY 525
           W+P+N +  S +L   +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,153
Number of Sequences: 438
Number of extensions: 4508
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)