Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1123
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   0.70 
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   2.1  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   3.7  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   3.7  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   4.9  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    24   6.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   6.5  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   6.5  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    24   8.6  

>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 262 KYQCRRDTNKRKYCLI 215
           K+  R+DTN RK+CL+
Sbjct: 38  KFPARKDTNPRKFCLL 53


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 199 HIAFSKCNSQNISRERSNKRSKMSLVLEK 113
           HIAF+  N   I RER+ K  K S   +K
Sbjct: 347 HIAFTGLNKPTIERERNLKLRKKSRFYKK 375


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 111 YFSKTSDIFDRLFDLSRLMFCELHLLKAMCLTNDVIKQYFLLFVSRL 251
           YF+KT     RLF    L+ C  + LK   LT        ++FV+ +
Sbjct: 39  YFTKTH--LHRLFVFVVLLLCSGYFLKHTLLTRPKESNVVMIFVNNI 83


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 300 LYT*STFIVNSIKNTSADEIQIRENIV*LHRWLNTSLSV 184
           LY     IV S K  + +EI    N+  LHRWL+ SL V
Sbjct: 600 LYLFQPKIVCSEKYINHEEID-NMNLKSLHRWLSRSLHV 637


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 105 YLYFSKTSDIFDRLFDLSRLMFCELHLLKAMC 200
           +L+  + S +F+     +  M+C  HL+ A+C
Sbjct: 189 FLFIHRESFLFEYFHRSNDNMYCSEHLIYALC 220


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = -3

Query: 177 IHKT*VGKDQTNDQRCHLF*KNKDKIESHSKITLV---TKNVTSINFC 43
           I K       T+D   HLF +     +S+ +I L     KN+T  N C
Sbjct: 32  ISKAFASVSSTSDSTVHLFERGNTLNDSNDQILLTCNDIKNITPANQC 79


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 196 IAFSKCNSQNISRERSNKRSKMSLVLEK 113
           +AF K  S  I RE++N   + SL  E+
Sbjct: 902 VAFEKAESLKIFREKANAMKERSLSYEE 929


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 121 KQVTSLIVCLIFPDLCFVNCI 183
           +++   I C IFP +C V CI
Sbjct: 55  RRLVRKIDCTIFPVMCLVYCI 75


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 179 QFTKHKSGKIKQTIKDVTCFRKIKI 105
           +FT  K G I Q  K  TCF ++ I
Sbjct: 621 KFTIEKVGHISQLPKAHTCFNRLDI 645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,375,620
Number of Sequences: 5004
Number of extensions: 25111
Number of successful extensions: 71
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)