Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1123
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical p...    28   1.8  
AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical...    28   1.8  
AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear recep...    28   1.8  
AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear recep...    28   1.8  
AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear recep...    28   1.8  
U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine rec...    27   4.2  
Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z46937-3|CAA87058.2|  457|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AY305839-1|AAR11984.1|  274|Caenorhabditis elegans nuclear recep...    26   7.3  
AF273771-1|AAG15120.1|  454|Caenorhabditis elegans nuclear recep...    26   7.3  
AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine re...    26   7.3  
AF016655-1|AAK72055.3|  318|Caenorhabditis elegans Serpentine re...    26   9.7  

>Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical
           protein F17B5.3 protein.
          Length = 239

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 247 RDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNKRSKMS 128
           R+ N RK   +  ++KH+  S   S + S ERS +R K S
Sbjct: 21  RNENPRK---VIKIIKHVGSSSSYSSSSSEERSKRRHKNS 57


>Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 268 NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 143
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 42  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 83


>AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 268 NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 143
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 42  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 83


>AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 268 NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 143
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 41  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 82


>AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 268 NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 143
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 40  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 81


>AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 268 NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 143
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 36  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 77


>U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine
           receptor, class v protein32 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 220 NNIFSYLYLVCTGIFY 267
           NNI+ +LY+ CTGI +
Sbjct: 95  NNIYYFLYIRCTGIIF 110


>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 210 DVIKQYFLLFVSRLHWYFLLNLL*MYFKCIIL 305
           D+I  YF+LF++ LH  + +N+L   F   I+
Sbjct: 58  DMITMYFVLFLNILHSNWSINILYSVFSLTIV 89


>Z46937-3|CAA87058.2|  457|Caenorhabditis elegans Hypothetical
           protein F43C1.4 protein.
          Length = 457

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -2

Query: 268 NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNKRSKMSLVLEK 113
           N ++QC++D N   +  +  + +   F KC    + RE   KR     + +K
Sbjct: 51  NIQFQCKKDKNCVIFHELRMICRACRFDKCVKAGMRRECVQKRRSNKKIPKK 102


>AY305839-1|AAR11984.1|  274|Caenorhabditis elegans nuclear receptor
           NHR-20 protein.
          Length = 274

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -2

Query: 268 NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNKRSKMSLVLEK 113
           N ++QC++D N   +  +  + +   F KC    + RE   KR     + +K
Sbjct: 51  NIQFQCKKDKNCVIFHELRMICRACRFDKCVKAGMRRECVQKRRSNKKIPKK 102


>AF273771-1|AAG15120.1|  454|Caenorhabditis elegans nuclear receptor
           NHR-20 protein.
          Length = 454

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -2

Query: 268 NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNKRSKMSLVLEK 113
           N ++QC++D N   +  +  + +   F KC    + RE   KR     + +K
Sbjct: 48  NIQFQCKKDKNCVIFHELRMICRACRFDKCVKAGMRRECVQKRRSNKKIPKK 99


>AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine
           receptor, class sx protein8 protein.
          Length = 296

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 176 IAFTESDVFNQRCN*TIFSLI---CISSALVFFIEFTINVL*VY 298
           +  T+S +  Q C    FS +   C+ S ++FFI   I +L V+
Sbjct: 65  LMLTDSVILRQTCFNITFSTVFCYCVQSTIMFFILLDILILVVF 108


>AF016655-1|AAK72055.3|  318|Caenorhabditis elegans Serpentine
           receptor, class h protein297 protein.
          Length = 318

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 150 DLSRLMFCELHLLKAMCLTNDVIKQYFLLFVSRLHWYFL 266
           D+S L    L++L  + +      +Y++LFV   +W ++
Sbjct: 90  DISELTIRTLYMLVPISIITMFENRYYILFVQNGYWQYI 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,471,570
Number of Sequences: 27780
Number of extensions: 137523
Number of successful extensions: 356
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)