Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1123
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.38 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   0.66 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   3.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   3.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   3.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   3.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   3.5  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.38
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 265 KKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQN-ISRERSNKRSKMSLVLEK 113
           K+Y C R+  ++ Y    S  K+   SK  S++   RERS +   +S +  K
Sbjct: 270 KRYSCSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLSNK 321


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 84  FLNVIQSYLYFSKTSDIFDRLFDLSRLMFCELHLLKAMCLTN 209
           F N   SYL+   + + F RL+   R+++     +KA C  N
Sbjct: 92  FYNGKHSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAGCPMN 133


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 84  FLNVIQSYLYFSKTSDIFDRL 146
           F+N  QSY + + TS+ F R+
Sbjct: 100 FVNEKQSYFHIATTSNEFIRI 120


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 84  FLNVIQSYLYFSKTSDIFDRL 146
           F+N  QSY + + TS+ F R+
Sbjct: 100 FVNEKQSYFHIATTSNEFIRI 120


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 102 SYLYFSKTSDIFDRLFDLSRLMFCE 176
           SYL   K  D    L  L R +FCE
Sbjct: 30  SYLLNCKNYDHPTTLLKLKRYLFCE 54


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 286 YIYSKFNKKYQCRRDTNKRKYCLITSLVKH 197
           ++Y  +++K   RRD+ ++ Y  +  L  H
Sbjct: 250 FLYISWHQKELVRRDSRRKNYGGVYHLDNH 279


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 84  FLNVIQSYLYFSKTSDIFDRL 146
           F+N  QSY + + TS+ F R+
Sbjct: 39  FVNEKQSYFHIATTSNEFIRI 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,245
Number of Sequences: 438
Number of extensions: 2066
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)