Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1122
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604           33   0.13 
08_02_0082 + 12059692-12060209,12060484-12060973                       33   0.13 
11_02_0125 + 8572035-8572112,8573603-8574016,8574171-8574428,857...    32   0.30 
01_05_0514 - 22876264-22878567                                         29   1.6  
02_02_0104 - 6802017-6802352,6802756-6803650,6803839-6803988,680...    29   2.8  
02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409...    27   6.4  
06_01_0083 - 659510-661267,661577-662384,662700-663646                 27   8.5  

>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
          Length = 259

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 22/84 (26%), Positives = 32/84 (38%)
 Frame = +1

Query: 25  GADNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAI 204
           G D ++L E  +    +     V+       + NAAK   Y E K   K ++C F K   
Sbjct: 45  GEDKINLEEMLRHAEPEVPMGSVRGLNNFEALQNAAKEVMYDESKGCNKKIVCEFGKVTK 104

Query: 205 LNSDGTLNMDVALAKLPPGVNKSE 276
             S GT    +   K P    K +
Sbjct: 105 KPSKGTKRKKLEKTKKPKDSKKPD 128


>08_02_0082 + 12059692-12060209,12060484-12060973
          Length = 335

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = -2

Query: 365 PL**HWKISKALSAASCPVLSLHCSSTLWASDLLTPGGSFASATSMFNVPSEFKIADLLK 186
           PL  H     A+SAA C  +   C    W S++  PG    +    F   ++  +   L+
Sbjct: 33  PLTEHDDAISAMSAAHCNNMQFRCYRGFWISEMWAPG--VVAVHRSFAPRADDVLVASLQ 90

Query: 185 KQSTNFLKALS 153
           K  T +LKAL+
Sbjct: 91  KSGTTWLKALT 101


>11_02_0125 +
           8572035-8572112,8573603-8574016,8574171-8574428,
           8574781-8574966
          Length = 311

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +1

Query: 175 VLCFFNKSAILNSDGTLNMDVALAKLPPGVNKSEAQSVLEQCKDKTGQDAADKAFEIFQC 354
           ++   NK+A+ NS  T+ + + L  LP        QS LEQCK    Q+ A +  +  Q 
Sbjct: 74  IMAISNKNAMNNS--TMEVQIFLNDLPSNDFNHIFQS-LEQCKQSIAQECASRGLQPPQY 130

Query: 355 YYKG 366
           Y  G
Sbjct: 131 YVAG 134


>01_05_0514 - 22876264-22878567
          Length = 767

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/72 (26%), Positives = 27/72 (37%)
 Frame = -2

Query: 332 LSAASCPVLSLHCSSTLWASDLLTPGGSFASATSMFNVPSEFKIADLLKKQSTNFLKALS 153
           L   SC   S + S TLW  DL+   G+  S T  + +     +A  L          + 
Sbjct: 336 LGNCSCTAYSYNGSCTLWYGDLINLRGANGSGTDGYRISIRLGVASDLSGTGNTKKMTIG 395

Query: 152 SEYCPVFAAFIT 117
                V AA +T
Sbjct: 396 LVVAGVVAAAVT 407


>02_02_0104 -
           6802017-6802352,6802756-6803650,6803839-6803988,
           6804099-6804349
          Length = 543

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 314 PVLSLHCSSTLWASDLLTPGGSFASATSMFNVPSEFKIADL--LKKQSTNFLKALSSEYC 141
           PVL L  S  L A  L+     F S  ++   P+ F I  L  L K   +  +A++ EY 
Sbjct: 21  PVLLLGSSLALLAVFLVYFYAPFWSLRTVPGPPTRFPIGHLHLLAKNGPDVFRAITKEYG 80

Query: 140 PVF 132
           P+F
Sbjct: 81  PIF 83


>02_04_0258 +
           21339682-21339806,21340635-21340730,21340905-21340980,
           21341085-21341143,21341280-21341380,21341447-21341773,
           21341861-21342021,21342100-21342303,21342735-21342966,
           21343629-21344239
          Length = 663

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 25  GADNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYS 150
           G+ N H   +Q  KA Q ++    E+  ST   N  + G+Y+
Sbjct: 436 GSSNTHKQLSQPAKAGQTSTGTTSEADGSTSAYNGNQAGRYA 477


>06_01_0083 - 659510-661267,661577-662384,662700-663646
          Length = 1170

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
 Frame = +1

Query: 91   VKESGVSTEVINAAKTGQYSEDKA-FKKFVLCFFNKSAILNSDGTLNMDVALAKLPPGVN 267
            VK S V++E   A +   + +++    +F   F N + ++NS              PGV 
Sbjct: 763  VKTSTVASEERQALRMADFDDEEMNMSQFPKKFGNSNFLINSIPIAEFQGRPLADHPGVK 822

Query: 268  KSEAQSVLEQCKDKTGQDAADKAFEIFQCYYK 363
                   L   +D        +A  +  C+Y+
Sbjct: 823  NGRPPGALTVPRDLLDASTVAEAISVISCWYE 854


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,485,983
Number of Sequences: 37544
Number of extensions: 204403
Number of successful extensions: 560
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)