Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1120
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.03 |||microfibrillar-associated protein family protein|...    25   2.1  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   2.1  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   3.8  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   3.8  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    24   6.6  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    24   6.6  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    23   8.7  

>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 132 NSQHIPTSQFQVSSPFETKPKSKFY*IAPFKTERMIASSLSEF 4
           +S+H+ T  F+     ETK  S F  I P +T   I +S SE+
Sbjct: 49  SSRHVITPVFEKEGISETKTSSNFQNINPVQT---IDNSASEY 88


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 215 CGGSTIPACHSFGRYCNVIKRSGLYNSRIVNIFQRHNFKSQALLRQS-QNLN 63
           CG +   A  S   Y   +K SG+++   V+   + N   QA+   + +NLN
Sbjct: 10  CGQTLQSANESATGYIKPLKLSGIFSKGSVSNLLKKNLDEQAIFNNAFKNLN 61


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 140 YTNLNV*LHYSTYRTSDTLVLCYPHKIVN 226
           YTN  +   YS Y   D   L + H +VN
Sbjct: 198 YTNTELAYLYSMYAAEDVKTLIHQHILVN 226


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 170 STYRTSDTLVLCYPHKIVNVVTIKLKKNI 256
           +T  T+D LVLC+      VVT   KK I
Sbjct: 748 TTLSTNDNLVLCWRDLNFTVVTKTSKKQI 776


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 117 PTSQFQVSSPFETKPKSKFY*IAPFKTE 34
           P+S    SSP++ K  SK   +  FKT+
Sbjct: 182 PSSPSSSSSPYKNKDNSKSNSLLSFKTD 209


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 206 STIPACHSFGRYCNVIKRSGLYNSRIVNIF-QRHNFKSQALLRQSQNLNFIE*H 48
           +T+P  H    Y N  +    Y ++++N F Q+++ K     R    +N I  H
Sbjct: 2   ATVPTYHDLSFYSNPKENKARY-AKLLNSFEQKYHCKPDFFSRSPGRVNIIGEH 54


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 146 LYNSRIVNIFQRHNFKSQALLRQSQNLNF 60
           +Y+ R  + +  HN K  +LLRQ+    F
Sbjct: 312 IYSGRESSFYDLHNRKIMSLLRQTTTTPF 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,151,158
Number of Sequences: 5004
Number of extensions: 19990
Number of successful extensions: 38
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)