Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1120
         (320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   3.7  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   4.8  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   4.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   8.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 132 NSQHIPTSQFQVSS 91
           N QH P  Q QVS+
Sbjct: 914 NQQHFPHHQIQVST 927


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 7   LTQRRSNHAFRFKGCYSIKFRFWLCLKRA 93
           LT+RR     R  G    + + W   KRA
Sbjct: 45  LTERRRQQLSRDLGLTEAQIKIWFQNKRA 73


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 7   LTQRRSNHAFRFKGCYSIKFRFWLCLKRA 93
           LT+RR     R  G    + + W   KRA
Sbjct: 45  LTERRRQQLSRDLGLNEAQIKIWFQNKRA 73


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 45  FKTERMIASSLSEFY 1
           + T+ +I SSLS FY
Sbjct: 339 YNTDFIIYSSLSSFY 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,059
Number of Sequences: 438
Number of extensions: 1352
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)