Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1120
         (320 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative ...    27   3.7  
At5g22360.1 68418.m02609 synaptobrevin family protein similar to...    25   8.6  

>At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative /
           proton pump, putative strong similarity to P-type
           H(+)-transporting ATPase from [Phaseolus vulgaris]
           GI:758250, [Lycopersicon esculentum] GI:1621440,
           SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
           tuberosum] GI:435001; contains InterPro accession
           IPR001757: ATPase, E1-E2 type
          Length = 931

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 256 YIFF*FNCHHIDNFVGVAQYQRVTRSVGTVM*SNVQVCIIVE 131
           + FF    H +DN   +  +Q+V  S+G     ++ + IIVE
Sbjct: 199 HTFFGKAAHLVDNTNQIGHFQKVLTSIGNFCICSIALGIIVE 240


>At5g22360.1 68418.m02609 synaptobrevin family protein similar to
           Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
          Length = 221

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 218 FCGGSTIPACHS 183
           FCGG T+P+C S
Sbjct: 210 FCGGITLPSCRS 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,698,173
Number of Sequences: 28952
Number of extensions: 96794
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)