Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1119
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   4.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   4.5  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   4.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   4.5  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    24   6.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   6.0  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    24   7.9  
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    24   7.9  

>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 95  QKKVPSATEILEKAKALQKVKATI 166
           +KK PSA E LEK+  +Q  K ++
Sbjct: 386 EKKEPSAFETLEKSSNVQTYKPSL 409


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 336 PWIAALCSDIS---LMELHLKGHILHAXRNSLKLG 241
           P +  LC  IS   L+ LHL+  I  +  N++K+G
Sbjct: 254 PQVLLLCPSISIFNLILLHLRALIRSSPENAIKIG 288


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 188 RGRKRKSDLPPPHELLASPNF 250
           RG   + +LPP H+L+   NF
Sbjct: 355 RGEDNEFELPPEHDLVGFVNF 375


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 241 RGQQLVGRGEVALPLPAPPPGSRLGYGG 158
           RG+  +G G     LP PPP  R    G
Sbjct: 322 RGKPPIGNGSSNSSLPPPPPPPRSNAAG 349


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 32  SALPQVNSQQKKDETQVVHVTQKKVPSATEILEK 133
           + + +VN QQ+K +     VT+K   S  E  EK
Sbjct: 162 AVVSEVNPQQQKSQDSSSFVTEKPASSEKEDKEK 195


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 62   KKDETQVVHVTQKKVPSATEI 124
            K  +TQ+ H T   V SATEI
Sbjct: 1135 KNVQTQIEHTTLSTVTSATEI 1155


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 227 ELLASPNFKLFLXACKMCPFKCNSIKEMSEHKAAI 331
           +LL  PN    L  CK+   K NSI   SE  +A+
Sbjct: 688 KLLFQPNQDEKLKLCKLDLAKANSITLKSEPSSAV 722


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 300 MELHLKGHILHAXRNSLKLGEASSS 226
           MEL +KG ++H   + L LGE   S
Sbjct: 56  MELGIKGSLIHYRDDKLFLGEYPKS 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,216,092
Number of Sequences: 5004
Number of extensions: 19269
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)