Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1119
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   4.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +2

Query: 281 PFKCNSIKEMSEHKAAIH 334
           P+KC+  +   EH   +H
Sbjct: 147 PYKCDVCERAFEHSGKLH 164


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 304 LDGVTLEGTHLARXQEQLEVGRGQQLVGRGEVALPLPAPP 185
           ++ V  E T L +  E+ +    + ++   E  L +PAPP
Sbjct: 320 VEAVQKELTDLGKLGEEEKADWWKDIMLLNEKTLAVPAPP 359


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 304 LDGVTLEGTHLARXQEQLEVGRGQQLVGRGEVALPLPAPP 185
           ++ V  E T L +  E+ +    + ++   E  L +PAPP
Sbjct: 320 VEAVQKELTDLGKLGEEEKADWWKDIMLLNEKTLAVPAPP 359


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 304 LDGVTLEGTHLARXQEQLEVGRGQQLVGRGEVALPLPAPP 185
           ++ V  E T L +  E+ +    + ++   E  L +PAPP
Sbjct: 320 VEAVQKELTDLGKLGEEEKADWWKDIMLLNEKTLAVPAPP 359


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -1

Query: 344 APRRGSPP 321
           AP+RGSPP
Sbjct: 33  APQRGSPP 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,115
Number of Sequences: 438
Number of extensions: 1296
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)