Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1118
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   5.3  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   5.3  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   5.3  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   5.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.2  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   9.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.2  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 396 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 292
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 396 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 292
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 396 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 292
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 396 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 292
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 529 LLHAXHPADQQTRLWRG 579
           LLH   P D   RLW G
Sbjct: 463 LLHLIFPPDIAKRLWLG 479


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 443 PFPPLAFREIHNTFAFRIYIVTSI 372
           PFP  AFR+  ++ A+R     S+
Sbjct: 91  PFPAAAFRQDVHSAAYRCVASNSV 114


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 443 PFPPLAFREIHNTFAFRIYIVTSI 372
           PFP  AFR+  ++ A+R     S+
Sbjct: 91  PFPAAAFRQDVHSAAYRCVASNSV 114


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 547 GAPRAGEVGFGSEGL 503
           G P   E+GF +EGL
Sbjct: 209 GVPTLEELGFDTEGL 223


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 377 SIVSDSNMHDKIT 339
           S +SD+N+H KIT
Sbjct: 105 SAISDTNVHLKIT 117


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -2

Query: 164 DLFFYKAELDFNMLRCNFSSSFCNQCD--ELLAFX---NES*FISYNFFFFRSR 18
           D FF    +D +   C+ + ++ +      L+ +    N+S  I++NFF+F  R
Sbjct: 169 DSFFVDLVIDVDPNNCDNTYAYISDLSGYALVVYSWAKNDSWRITHNFFYFDPR 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,055
Number of Sequences: 438
Number of extensions: 2922
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)