Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1117
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400...    28   3.0  
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110...    28   3.0  
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687...    27   9.2  

>12_02_1042 +
           25638585-25638711,25639585-25639745,25639873-25640064,
           25640221-25640315,25640645-25640807,25640905-25641015,
           25641611-25642741,25642813-25642965,25643060-25643159,
           25643333-25643427,25643508-25643681,25643751-25643807,
           25643887-25643958,25644151-25644249,25644320-25644451,
           25644549-25644722,25644830-25644957,25645065-25645119
          Length = 1072

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 297 FXFNESWSLLIXINYN*XXKYNNIMXFLTXVTPA 398
           F +  SW L + +N     KYN +M FL  V  A
Sbjct: 831 FTYKVSWPLDLIVNTEALKKYNQVMAFLLKVKRA 864


>02_04_0038 -
           19110520-19110574,19110684-19110811,19110912-19111085,
           19111189-19111320,19111391-19111489,19111680-19111751,
           19111831-19111887,19111957-19112130,19112211-19112305,
           19112478-19112577,19112672-19112824,19112896-19114026,
           19114621-19114731,19114829-19114991,19115364-19115458,
           19115613-19115804,19115929-19116069
          Length = 1023

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 297 FXFNESWSLLIXINYN*XXKYNNIMXFLTXVTPA 398
           F +  SW L + +N     KYN +M FL  V  A
Sbjct: 782 FTYKVSWPLDLIVNTEALKKYNQVMAFLLKVKRA 815


>06_01_1193 +
           10264360-10264504,10264763-10264910,10268350-10268748,
           10268925-10271214
          Length = 993

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 176 QVRKALLRVKDWSSVQPRPN*IKTNILSGRKDFDCY 283
           Q+R    RV++ SS   R N +K    S   D DCY
Sbjct: 170 QIRNLKSRVEEVSSRNSRYNLVKPISSSNEDDMDCY 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,493,111
Number of Sequences: 37544
Number of extensions: 124513
Number of successful extensions: 210
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)