Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1115
         (620 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I3A6 Cluster: Putative uncharacterized protein PFI021...    34   2.4  
UniRef50_Q0UIJ9 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_Q54MK9 Cluster: Putative uncharacterized protein; n=1; ...    34   3.1  
UniRef50_Q18ER3 Cluster: DNA polymerase II large subunit (EC 2.7...    33   4.2  
UniRef50_A2FAI5 Cluster: Ankyrin repeat protein, putative; n=1; ...    33   7.3  
UniRef50_Q7RD10 Cluster: Cyclin, putative; n=2; Plasmodium (Vinc...    32   9.6  

>UniRef50_Q8I3A6 Cluster: Putative uncharacterized protein PFI0210c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFI0210c - Plasmodium falciparum
           (isolate 3D7)
          Length = 2454

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 214 YVFLHKF*KII-KKSSLTPSLIKFIFSWSVWYLL-PQSAFQYEHVF*TIKLHIFQICDII 387
           Y+ L +  KII KK +L   +   +F    W  + P   + Y++      +HIFQ   II
Sbjct: 508 YIILQQKAKIINKKDTLFLIIFIILFHKKFWITINPSLYYNYKNGLYNNNIHIFQFMIII 567

Query: 388 LNYIYINMHLKICMYK 435
           +++    + + IC+Y+
Sbjct: 568 ISFSIYVLIIHICVYE 583


>UniRef50_Q0UIJ9 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 521

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 541 LKPSSARPINTLRKVQKSYSTTLRWCKKHGQPKYP 437
           LK      +NTLR +  S    L W  KHG+P+YP
Sbjct: 202 LKLDRGPHMNTLRVLHASAEKELAWIDKHGKPRYP 236


>UniRef50_Q54MK9 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 2050

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 17/72 (23%), Positives = 41/72 (56%)
 Frame = +1

Query: 124 KEKQKKTKLIFKPK*VSNCILQLYLNVN*VYVFLHKF*KIIKKSSLTPSLIKFIFSWSVW 303
           KEK+K+   I++P+ + +C+LQ+    N V   L++     +K +++  L+  ++ + ++
Sbjct: 525 KEKEKEDLQIYQPQLILDCLLQIINGNNQV---LNRVVCFNEKDTVSSILVNSLYKFLIY 581

Query: 304 YLLPQSAFQYEH 339
           ++    +F Y H
Sbjct: 582 FIEQYESFGYRH 593


>UniRef50_Q18ER3 Cluster: DNA polymerase II large subunit (EC
           2.7.7.7) (Pol II) [Contains: Hwa polC 1 intein (Hwa pol
           II 1 intein); Hwa polC 2 intein (Hwa pol II 2 intein)];
           n=3; Halobacteriaceae|Rep: DNA polymerase II large
           subunit (EC 2.7.7.7) (Pol II) [Contains: Hwa polC 1
           intein (Hwa pol II 1 intein); Hwa polC 2 intein (Hwa pol
           II 2 intein)] - Haloquadratum walsbyi (strain DSM 16790)
          Length = 2289

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 490 SYSTTLRWCKKHGQPKYPPYTYIF*D 413
           ++   +RW KKH  P +P YTY++ D
Sbjct: 495 TFENAMRWAKKHDIPLHPAYTYLWHD 520


>UniRef50_A2FAI5 Cluster: Ankyrin repeat protein, putative; n=1;
           Trichomonas vaginalis G3|Rep: Ankyrin repeat protein,
           putative - Trichomonas vaginalis G3
          Length = 262

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 12/35 (34%), Positives = 25/35 (71%)
 Frame = -3

Query: 444 NIHLIHTYFKMHIYIYIVQDDITDLKYM*FYSLEN 340
           +I+ I TY   ++Y+ ++Q+DI+++ Y  F+ +EN
Sbjct: 49  DIYPIITYNNFYLYLILLQEDISNIIYAPFFGIEN 83


>UniRef50_Q7RD10 Cluster: Cyclin, putative; n=2; Plasmodium
           (Vinckeia)|Rep: Cyclin, putative - Plasmodium yoelii
           yoelii
          Length = 503

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +1

Query: 238 KIIKKSSLTPSLIKFIFSWSVWYLLPQSAFQYEHVF*TIKLHIFQ 372
           K+ KK +LTPSLI F   ++++ LL    F  +H +  I+LHI Q
Sbjct: 453 KLDKKENLTPSLI-FSVEFTLYKLLD---FSLQHTYENIRLHIHQ 493


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,152,993
Number of Sequences: 1657284
Number of extensions: 9802828
Number of successful extensions: 23075
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23039
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)