Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1115
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.8  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.7  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -2

Query: 610 FTAEIGRVVVPTPCVLTRDPXXPLKPSSARPINTLRKVQKSYSTTLRWCKKHGQPKYPPY 431
           FT +  R+  P   V   D     K +++RP+  L    K+   TL+  K+    KYPP 
Sbjct: 213 FTTDYDRI--PLIKVPKFDAIIEKKLANSRPLTALFGPMKASKATLKSMKEAILKKYPPG 270

Query: 430 T 428
           T
Sbjct: 271 T 271


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 508 LRKVQKSYSTTLRWCKKHGQPKYPPYTYI 422
           ++K++K +S  L  CKK G    PP  Y+
Sbjct: 291 VKKLEKYWSIYLSNCKKLGISTLPPSNYL 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,245
Number of Sequences: 5004
Number of extensions: 47436
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)