Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1114
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 2.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 2.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 2.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 2.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 2.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 2.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 2.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 2.8
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 26 3.7
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 6.4
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 25 6.4
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 25 8.5
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 2.1
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = -1
Query: 294 MTDVSAKGTFFPMHLSTVLFK---LSRTRTLKAMYPREAATA*SNTAP---DSTALSAWR 133
+T +A T P+ STVL ++ + L + P ++TA + + P S S+
Sbjct: 3036 ITSSTALNTSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTA 3095
Query: 132 RPPASLPSSNALAQATHSRGRHTMLTASSILRLPNPVT 19
+S+ +S+ ++ T +T+SSIL P+T
Sbjct: 3096 ITSSSIVNSSTPITSSSVLNSSTAITSSSILNSSTPIT 3133
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 275 LADTSVIISSSAHNLSQVNRSS 340
L D ++ ISSS H LSQ+N+ S
Sbjct: 345 LYDNNIEISSSKHTLSQMNKVS 366
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 275 LADTSVIISSSAHNLSQVNRSS 340
L D ++ ISSS H LSQ+N+ S
Sbjct: 345 LYDNNIEISSSKHTLSQMNKVS 366
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 275 LADTSVIISSSAHNLSQVNRSS 340
L D ++ ISSS H LSQ+N+ S
Sbjct: 345 LYDNNIEISSSKHTLSQMNKVS 366
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 275 LADTSVIISSSAHNLSQVNRSS 340
L D ++ ISSS H LSQ+N+ S
Sbjct: 345 LYDNNIEISSSKHTLSQMNKVS 366
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 275 LADTSVIISSSAHNLSQVNRSS 340
L D ++ ISSS H LSQ+N+ S
Sbjct: 345 LYDNNIEISSSKHTLSQMNKVS 366
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 275 LADTSVIISSSAHNLSQVNRSS 340
L D ++ ISSS H LSQ+N+ S
Sbjct: 345 LYDNNIEISSSKHTLSQMNKVS 366
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 275 LADTSVIISSSAHNLSQVNRSS 340
L D ++ ISSS H LSQ+N+ S
Sbjct: 345 LYDNNIEISSSKHTLSQMNKVS 366
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 275 LADTSVIISSSAHNLSQVNRSS 340
L D ++ ISSS H LSQ+N+ S
Sbjct: 345 LYDNNIEISSSKHTLSQMNKVS 366
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 275 LADTSVIISSSAHNLSQVNRSS 340
L D ++ ISSS H LSQ+N+ S
Sbjct: 345 LYDNNIEISSSKHTLSQMNKVS 366
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 275 LADTSVIISSSAHNLSQVNRSS 340
L D ++ ISSS H LSQ+N+ S
Sbjct: 345 LYDNNIEISSSKHTLSQMNKVS 366
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 275 LADTSVIISSSAHNLSQVNRSS 340
L D ++ ISSS H LSQ+N+ S
Sbjct: 345 LYDNNIEISSSKHTLSQMNKVS 366
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 363 SQVGRCGTLAFQHLPRHLDPPRKLVLVHTAAAMDSY 470
S+ GR L FQH P ++ R+L + + DS+
Sbjct: 224 SRTGRAHRLTFQHHPADVEEARRLRRYNMGFSRDSF 259
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 395 KCQCSASADLAPCCCGKPMTICSLVRG 315
+C C + PCC GK C L +G
Sbjct: 328 ECDCGEDCENNPCCDGK---TCKLTKG 351
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 369 PGSVLLW*ANDDLFTCER 316
PG +LLW A+ DLF ER
Sbjct: 136 PGFLLLWPASGDLFYWER 153
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 25.0 bits (52), Expect = 8.5
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2
Query: 200 YIAFNVRVRDNLKRTVLRCMGKKVPLADTSVIISSSAHNLSQVNRSSLAYHSSTEPGRQ 376
YI+FN+ R V + G + L D S A +L ++NR ++ + TEPG Q
Sbjct: 897 YISFNLNGR---YYPVRKFTGGVLMLIDRE---SDKAPDLIELNRDAVPASADTEPGEQ 949
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,604
Number of Sequences: 5004
Number of extensions: 28664
Number of successful extensions: 106
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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