Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1114
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0350 + 3847514-3848014 37 0.011
06_01_0913 - 7042230-7043332,7043420-7043621 30 1.6
05_03_0256 - 11110636-11110875 30 1.6
06_03_0067 - 16167420-16167845,16168291-16168406,16168634-161688... 29 2.8
02_03_0246 - 16807619-16808145,16808208-16808868 29 2.8
06_01_0912 - 7036420-7037503,7037599-7037819 29 3.8
03_06_0460 - 34098115-34098622,34098981-34099355,34100939-341011... 29 3.8
02_02_0579 + 11755361-11755545,11755695-11755763,11755904-11756420 29 3.8
12_02_0292 + 16979550-16980662,16983249-16983731 28 5.0
11_04_0069 - 13130590-13130934 28 5.0
03_06_0461 - 34107506-34107845,34107993-34108151,34108564-341087... 28 5.0
12_02_1176 + 26705994-26707175 28 6.6
06_01_0914 - 7047865-7049223 28 6.6
11_06_0714 + 26537196-26537248,26537391-26537725,26540032-265401... 27 8.7
09_02_0223 + 5977138-5977459,5979842-5980842 27 8.7
08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527 27 8.7
05_05_0120 + 22520285-22520569 27 8.7
03_05_0152 + 21291162-21291287,21291379-21291479,21293257-212933... 27 8.7
>10_01_0350 + 3847514-3848014
Length = 166
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Frame = -3
Query: 214 VEGDVSEGSGDGVKQYGAGQHGAERVAAPP--RLATQQQRARPGH-----AQQREAHDAD 56
V G+ G GDG++++ G+ +R+ APP R+ RAR GH ++R D
Sbjct: 69 VVGNGVAGDGDGLRRWRMGEARGKRLRAPPIGRIRRHSARARRGHRRRWVGRERLGGDGR 128
Query: 55 R*QHPQVAESRDVVP*P 5
Q + RD++P P
Sbjct: 129 GAQTARAGPDRDLLPTP 145
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 171 NTAPDSTALSAWRRPPAS--LPSSNALAQATHSRGRHTMLTASSILR 37
N PD+ L WR PAS LP+ +A A +RGRH S+ R
Sbjct: 109 NGRPDTGYLD-WRWRPASCELPAFDAAAFLAAARGRHVAFVGDSMAR 154
>05_03_0256 - 11110636-11110875
Length = 79
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -3
Query: 196 EGSGDGVKQY---GAGQHGAERVAAPPRLATQQQRARPGH 86
EGSGDG+ + G G++ R++ PR QQR + H
Sbjct: 19 EGSGDGIGEEEASGGGKNVGGRMSRHPRSGATQQRGKGNH 58
>06_03_0067 -
16167420-16167845,16168291-16168406,16168634-16168871,
16168903-16169033,16169100-16169289
Length = 366
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +3
Query: 303 AVPITSHK*TDRHWLTTAARSQVGRCGTLAFQHLPRHLDPPRKLVLVHTAAAMDS 467
AVP + T+R W ++ +G G FQHL P V+ ++ D+
Sbjct: 223 AVPKRDARFTNRRWCVRDSQIVIGGAGMFVFQHLIATQSPATAAVMAGESSTDDA 277
>02_03_0246 - 16807619-16808145,16808208-16808868
Length = 395
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 87 WPGRARCCWVARRGGAATRSAPCCPAP 167
WP R CC RR A+ ++PC P
Sbjct: 112 WPCRPPCCCGRRRRAASPSASPCTTPP 138
>06_01_0912 - 7036420-7037503,7037599-7037819
Length = 434
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 171 NTAPDSTALSAWRRPPAS--LPSSNALAQATHSRGRHTMLTASSILR 37
N P++ L WR PAS LP+ +A A +RGRH S+ R
Sbjct: 118 NGRPETGYLD-WRWQPASCELPAFDAAAFLAAARGRHVAFVGDSMAR 163
>03_06_0460 -
34098115-34098622,34098981-34099355,34100939-34101156,
34101235-34101297
Length = 387
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -1
Query: 201 YPREAATA*SNTAPDSTALSAWRRPP--ASLPSSNALAQATHSRGRHTMLTASSILR 37
Y + T ++ PD+ A WR P SLPS NA RG+ + S+LR
Sbjct: 63 YIQPDLTCQAHGRPDA-AYQRWRWQPRDCSLPSFNATGMLEMLRGKRMLFVGDSLLR 118
>02_02_0579 + 11755361-11755545,11755695-11755763,11755904-11756420
Length = 256
Score = 28.7 bits (61), Expect = 3.8
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = -1
Query: 297 IMTDVSAKGTFFPMHLSTVLFKLSRTRTLKAMYPREAATA*SNTAPDSTALSAWRRPPAS 118
+ + VSA+ T P + L LSR T A + TAP S A PA+
Sbjct: 84 VRSPVSAEKTATP---PSRLPGLSRAATKSARRHSSITRFYTRTAPPSDAARTAISSPAA 140
Query: 117 LPSSNALAQATH--SRGRHTMLTASSILRLP 31
LP+++A +++ H GR A + LP
Sbjct: 141 LPATDAASRSPHVGHVGRAAPAAAERLQHLP 171
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Frame = -3
Query: 217 DVEGDVSE-GSGDGVKQY---GAGQHGAERVAAPPRLATQQQRARPGHAQQREAHDADR* 50
DV+ + E G+GDGV G G G E PR PG Q+R + R
Sbjct: 453 DVDEEEGEAGAGDGVPAMFGRGGGDAGDESGVVEPRKVVATSAGAPGTRQRRPEAKSWRQ 512
Query: 49 QHPQVAESR 23
H A +R
Sbjct: 513 HHWTPARTR 521
>11_04_0069 - 13130590-13130934
Length = 114
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 156 STALSAWRRPPASLPSSNALAQATHSRGRHTMLTASSI 43
+TAL AWR A + A A R RH TAS++
Sbjct: 33 TTALGAWRGGTAGVREPGTTATAEKRRWRHEEETASAL 70
>03_06_0461 -
34107506-34107845,34107993-34108151,34108564-34108763,
34109042-34109213,34111127-34111350,34111438-34111644
Length = 433
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -1
Query: 201 YPREAATA*SNTAPDSTALSAWRRPP--ASLPSSNALAQATHSRGRHTMLTASSILR 37
Y + T ++ PD TA WR P SLPS NA RG+ M S+ R
Sbjct: 113 YIQPQLTCQAHGRPD-TAYQHWRWQPRGCSLPSFNATLMLEMLRGKRMMFVGDSLNR 168
>12_02_1176 + 26705994-26707175
Length = 393
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 189 AATA*SNTAPDSTALSAWRRPPASLPSSNALAQATHSRGRHTMLTASSILRLPNP 25
A T+ P S +W R P + PSS L ++ S GRH + ++ P P
Sbjct: 148 ALTSLGERMPASFEALSWARDPCASPSS-LLFSSSSSPGRHYYWSWKNVADTPPP 201
>06_01_0914 - 7047865-7049223
Length = 452
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 195 REAATA*SNTAPDSTALSAWRRPPAS--LPSSNALAQATHSRGRHTMLTASSILR 37
+E+ N PD+ L WR PAS LP+ + A +RG+H S+ R
Sbjct: 116 KESERCVGNGRPDTGYLD-WRWQPASCELPAFDVAAFVGAARGKHVAFVGDSMAR 169
>11_06_0714 +
26537196-26537248,26537391-26537725,26540032-26540104,
26540442-26540790,26542766-26543248,26544899-26545027,
26545116-26545244
Length = 516
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 202 VSEGSGDGVKQYGAGQHGAERVAAP 128
VS G+G G+K +G+G E VA P
Sbjct: 56 VSRGNGAGLKVHGSGAVNTETVAIP 80
>09_02_0223 + 5977138-5977459,5979842-5980842
Length = 440
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 226 PYADVEGDVSEGSGDGVKQYGAGQHGAE 143
P +D EGD SGDG + G+G G +
Sbjct: 396 PPSDAEGDAPPPSGDGDEAPGSGAKGGK 423
>08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527
Length = 710
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 29 FGNLRMLLAVSIVCLPLLCVAWASALLLGSE 121
FGN +L A+ + CL L ++W +GS+
Sbjct: 217 FGNDGLLTAIDVFCLDLELMSWERVESIGSD 247
>05_05_0120 + 22520285-22520569
Length = 94
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = -3
Query: 223 YADVEGDVSEGSGDGVKQYGAGQHGAERVAAPPRLATQQQRARPGHA 83
+AD++ DV G+G GAG+ G + AA A QQ+ARP A
Sbjct: 24 FADLD-DVPAGAG------GAGEDGRKGAAATADAAGGQQQARPSPA 63
>03_05_0152 +
21291162-21291287,21291379-21291479,21293257-21293354,
21294016-21294068,21295465-21295659,21295812-21296084
Length = 281
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -1
Query: 306 LLLIMTDVSAKGTFFPMH-LSTVLFKLSRTRTLKAMYPREAATA*S-NTAPDSTA--LSA 139
+LL + S KG P H + + K ++ K + EA + N D A LS
Sbjct: 17 VLLFGVNNSVKGDLAPQHPIQATVHKEAKFWADKKRFGAEAIYGSAFNIRKDLDAQILSK 76
Query: 138 WRRPPASLPSS 106
++RPP +LPSS
Sbjct: 77 FQRPPGALPSS 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,583,531
Number of Sequences: 37544
Number of extensions: 275721
Number of successful extensions: 1231
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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