Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1114
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    29   3.3  
Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian ...    27   7.7  
U40417-10|AAA81418.2|  247|Caenorhabditis elegans Synaptogyrin f...    27   7.7  
AF079373-1|AAC27798.1|  247|Caenorhabditis elegans synaptogyrin ...    27   7.7  

>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 386 CSASADLAPCCCGKPMTICSLVRG 315
           C   A++  C C  P  +CSLV G
Sbjct: 237 CELKAEVNECICENPAHVCSLVNG 260


>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 383 SASADLAPCCCGKPMTICSLVRGYGHC 303
           S S      CC +P  +C L R  G+C
Sbjct: 394 SGSTTFGGVCCPRPQYVCKLPREQGNC 420


>U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 1 protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 184 DGVKQYGAGQHGAERVAAPPRLATQQ--QRARPGHAQQRE 71
           DG  Q  A     ++  APPR A+ Q  QR RP   QQ E
Sbjct: 173 DGTLQQPAQPQAPQQQQAPPRGASPQARQRKRPNTDQQSE 212


>U40417-10|AAA81418.2|  247|Caenorhabditis elegans Synaptogyrin
           family protein 1 protein.
          Length = 247

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -3

Query: 223 YADVEGDVSEGSGDGVKQYGAGQHGAERVAAPPRLATQQQRARPGHAQQ 77
           +  V  DV +G G     YG    G   V APP  ++ Q  A P   QQ
Sbjct: 190 FGQVSTDVQDGYG-----YGGDSTGIGHVGAPPPQSSYQSGAAPQTMQQ 233


>AF079373-1|AAC27798.1|  247|Caenorhabditis elegans synaptogyrin
           homolog protein.
          Length = 247

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -3

Query: 223 YADVEGDVSEGSGDGVKQYGAGQHGAERVAAPPRLATQQQRARPGHAQQ 77
           +  V  DV +G G     YG    G   V APP  ++ Q  A P   QQ
Sbjct: 190 FGQVSTDVQDGYG-----YGGDSTGIGHVGAPPPQSSYQSGAAPQTMQQ 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,882,720
Number of Sequences: 27780
Number of extensions: 184865
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)