Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1114
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.75 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.0  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   9.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 41  RMLLAVSIVCLPLLCVAWASALLLGSE 121
           RM++ VS+V L   C++    L++G+E
Sbjct: 157 RMIVYVSLVWLGAACISLPPLLIMGNE 183


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = -2

Query: 425 WWI*MSWKMLKCQCSASADLAPCC 354
           +++ + W +L+   S + +  PCC
Sbjct: 209 FYLSVEWDILEVPASRNEEYYPCC 232


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 590 TCADDAHRLF 561
           TC DD HR F
Sbjct: 116 TCEDDVHRKF 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,032
Number of Sequences: 438
Number of extensions: 2333
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)