Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1109
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 29 0.94
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 28 1.2
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 28 1.2
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 28 1.6
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 27 3.8
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 5.0
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 26 6.6
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 6.6
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu... 25 8.7
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 25 8.7
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 28.7 bits (61), Expect = 0.94
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 156 PFDKGEFEVQRFEPQQADEQRRDSGSDGEGPPTPL 260
P DK F++ P+++D + S S G G P P+
Sbjct: 2 PSDKPVFDIGSQAPERSDSESPSSRSIGSGTPAPV 36
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 115 HHDPKFFPNHHERIHSTKASLKCNDLNLNK 204
HHDP + N I+ T S + L+LN+
Sbjct: 470 HHDPSYLQNQTSEINDTNHSSHSSPLDLNR 499
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 234 DGEGPPTPLFDDDVSMPLEDFPRTKYTGP 320
D G PLF+ VSMPL P +K++ P
Sbjct: 373 DRTGVEAPLFELSVSMPLTLIPPSKFSEP 401
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -3
Query: 580 GRSL*NTYCSFTVKIFPYWSYCWAPISETE*QAWRGSSWNGSLSP 446
GR + +C VK+ W A ET +AWR S N SP
Sbjct: 355 GRIKEDIFCKKVVKVIEVWKTWIAFQEETLERAWRNFSGNTPQSP 399
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 571 RNGQGVRPGQVTKAERITNKLSQFAAYAIQGDYQGVKEFGSD 696
R QG+R K ++ K Q A+Y + G+ KE GS+
Sbjct: 4 RRPQGLRAAASLKKQQQLEKQKQEASYELSGNSSPSKENGSE 45
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 145 HERIHSTKASLKCNDLNLN-KRTNNVE 222
H RIH+ K SLK + L + K TN++E
Sbjct: 49 HGRIHNIKVSLKDDTLGIGAKATNDLE 75
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Frame = +3
Query: 144 PRTNPFDKGEFEVQRFEPQQADEQRRDSGSDGE-GPPTPLFDDDVSMPLEDFPRTKYT 314
P +N D G F +RD S PP+PL + S E F T T
Sbjct: 370 PESNIHDSGNFHPIHSSVDNNSFSQRDFDSPNSINPPSPLMSNHESASTEHFNSTTTT 427
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 156 PFDKGEFEVQRFEPQ--QADEQRRDSGSDGEGPPTPLFDD--DVSMPLE 290
PF +GE +++ FE Q +ADE + S E T ++ + S PLE
Sbjct: 86 PFGEGELKLENFENQENEADEAENEETSYSEQNHTENTEEIAEESRPLE 134
>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 506 WRPTIRPVREDLHRETAVRVLQ 571
W+PT + E++H++ A +V+Q
Sbjct: 19 WKPTKEALAEEIHKKYANKVIQ 40
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 493 RSRRLAPNNTTSTGRSSP*NCSTCSTRNGQGVRPGQVTKAERIT 624
+SR L+ NT S R S + TRN PG ++ R T
Sbjct: 96 QSRSLSVGNTRSLKRDSRGSSDHLLTRNRSNSTPGSISADYRTT 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,547
Number of Sequences: 5004
Number of extensions: 59090
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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