Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1109
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0116 + 18131510-18133192 33 0.18
04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344... 29 3.9
03_02_0513 + 9035204-9035422,9035552-9036091,9036512-9036742,903... 29 3.9
08_02_1618 + 28280414-28281193 28 6.9
07_03_1348 + 25945444-25945551,25946411-25946607,25946732-259468... 28 6.9
03_03_0068 - 14246747-14248069 28 6.9
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 28 6.9
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 28 6.9
11_06_0377 - 22900042-22900452,22900527-22902236 28 9.1
07_03_0622 + 20031385-20032341,20032423-20032953 28 9.1
>05_04_0116 + 18131510-18133192
Length = 560
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 481 WRGSSWNGSLSPAELNNCTTGLSPWSASFTKIFFQNLCPVI 359
WRG S +L P++ L+ W A F + F NLCP++
Sbjct: 210 WRGVS--AALFPSDAGAAGDALTAWEAEFARQSFLNLCPLL 248
>04_04_0466 +
25433678-25434007,25434118-25434176,25434345-25434426,
25435024-25435122,25435750-25435831,25436759-25436823,
25437241-25438308,25438369-25438446,25438550-25438596,
25438734-25438779,25438871-25438950,25439050-25439166,
25439842-25439923,25440156-25440281,25440415-25440489,
25440743-25440868,25441542-25441646
Length = 888
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 210 EQRRDSGSDGEGPPTPLFDDDVSMPLEDFPRTKYTGPGWEMQLRQ 344
E G GE PP P FD ++++ L F YT P ++ R+
Sbjct: 73 ESAAGEGLVGEDPPRPPFDLNLAVVLAGFAFEAYTSPPEDVGWRE 117
>03_02_0513 +
9035204-9035422,9035552-9036091,9036512-9036742,
9036829-9036969,9037344-9037541,9037644-9037937
Length = 540
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 248 SDSAL*RRRVYAARGLPPYKVYWTRMGNATTATEQE--EDNRTKVLEKNL 391
SD+ + RRV AA LP Y V T T T QE D T+ E+ L
Sbjct: 409 SDTGMPLRRVEAAMSLPKYTVSLTSKVGCTDMTYQEITPDTSTETAEEML 458
>08_02_1618 + 28280414-28281193
Length = 259
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 584 GSGPDKSQRPRGSPTSCLSSRPTLYKAIIKE--LRSLAAIYVS 706
G GP +RPR SP S S P A++ LAA+ V+
Sbjct: 66 GGGPTVRRRPRSSPASTPCSNPDAVLALLSTGLCADLAAVVVA 108
>07_03_1348 +
25945444-25945551,25946411-25946607,25946732-25946804,
25947003-25947092,25947410-25947465,25947559-25947738,
25947813-25948006,25948095-25948234,25948324-25948466,
25948549-25948697,25948784-25949148,25949264-25949368
Length = 599
Score = 28.3 bits (60), Expect = 6.9
Identities = 32/94 (34%), Positives = 39/94 (41%)
Frame = +2
Query: 332 ATTATEQEEDNRTKVLEKNLRETSAPRGQSCSTVVQLGRRQGTVPRATPPSLLLGLGDWR 511
A T T E + T EK LRE SC + T P T P+ L D
Sbjct: 508 AQTTTPVEANAETPASEK-LREVVKCNNPSCI--------EFTSPAHTVPTFL-PYADDM 557
Query: 512 PTIRPVREDLHRETAVRVLQGTARGSGPDKSQRP 613
PT P R + VL+ T+ GS PD SQ+P
Sbjct: 558 PT--PKFTASERNFLLSVLELTSPGSRPDTSQQP 589
>03_03_0068 - 14246747-14248069
Length = 440
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/20 (65%), Positives = 17/20 (85%), Gaps = 2/20 (10%)
Frame = +2
Query: 398 TSAPRGQSCSTVV--QLGRR 451
T+APRG+SC+TV QLGR+
Sbjct: 78 TTAPRGRSCTTVCVRQLGRK 97
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 249 PTPLFDDDVSMPLEDFPRTKYTGPGWEMQLRQPNK 353
P L D+V + P T Y GP W+ P+K
Sbjct: 515 PDSLKYDEVLLRATGLPSTAYNGPSWQQNQGLPHK 549
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -3
Query: 463 NGSLSPAELNNCTTGLSPWSASFTKIFFQNLCPVIFFLFGCRSCI 329
NG+ C + W T+ F+N CPV C++C+
Sbjct: 116 NGAEKNRRHRYCVKCIKRWYPHLTEDDFENCCPVCHNNCNCKTCL 160
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 210 EQRRDSGSDGEGPPTPLFDDDVSMPL 287
E R + DGEGPP DD PL
Sbjct: 358 EGHRSAHDDGEGPPFAALDDGEERPL 383
>07_03_0622 + 20031385-20032341,20032423-20032953
Length = 495
Score = 27.9 bits (59), Expect = 9.1
Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = +2
Query: 464 PRATPPSLLLGLGDWRPTIRPVREDLHRETAVRVLQGTARGSGPDKSQRPRGSPTSCLSS 643
PR P LGL ++ +R + R TA R LQG GP G+PT L+
Sbjct: 33 PRRNLPPGSLGLPLVGQSLSLLRA-MRRNTAERWLQGRIDRYGPVSKLSLFGAPTVLLAG 91
Query: 644 RPTLYKAII-------KELRSLAAI 697
P KA+ K+ RSLAAI
Sbjct: 92 -PAANKAVFLSEALAPKQPRSLAAI 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,344,098
Number of Sequences: 37544
Number of extensions: 447909
Number of successful extensions: 1641
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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