Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1109
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...   109   2e-24
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    31   1.2  
U97196-5|AAB52458.3|  368|Caenorhabditis elegans G protein, alph...    28   6.2  
U97196-4|AAP68962.2|  408|Caenorhabditis elegans G protein, alph...    28   6.2  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    28   6.2  
AY008136-1|AAG32089.1|  368|Caenorhabditis elegans heterotrimeri...    28   6.2  

>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
            C27H6.1 protein.
          Length = 1657

 Score =  109 bits (263), Expect = 2e-24
 Identities = 59/146 (40%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
 Frame = +3

Query: 150  TNPFDKGEFEVQRFEPQQADEQRRDSGSDGEGPPTPLFDDDVSMPLEDFPRTKYTGPGWE 329
            + P  +G   + +  P   ++  + +   G   PTPL+D+D S PL DF   K+ G GW+
Sbjct: 1044 STPTPEGGSPISQQRPNAFEDDFKCAELTGLDTPTPLYDEDDSQPLTDFI-PKFDGDGWD 1102

Query: 330  MQLRQPNKKK-ITGQRFWKKIFVKLALQGDNPVVQLFNSAGDKEPFQELPLQACYSVSEI 506
            + +R P KKK    +R WK  +V+L        + L+N   D +P QEL LQA YS+S+ 
Sbjct: 1103 LMVRHPIKKKSFMAERCWKPCYVRL----HGLTLYLYNDKKDAQPIQELLLQATYSLSDT 1158

Query: 507  GAQQYDQYGKIFTVKLQYVFYKERPG 584
              Q YD YGKI TVKLQ+V YKE+ G
Sbjct: 1159 TLQAYDVYGKIHTVKLQFVVYKEKVG 1184


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
            protein C05D11.1 protein.
          Length = 995

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/76 (30%), Positives = 34/76 (44%)
 Frame = +2

Query: 320  RMGNATTATEQEEDNRTKVLEKNLRETSAPRGQSCSTVVQLGRRQGTVPRATPPSLLLGL 499
            R      A E+  D   K++E      +   G   STV ++ +R+GTV  A   S+   L
Sbjct: 863  RCAQPAVAYERTRDIIRKIVESGEISKAEFEGAKRSTVFEMMKREGTVSGAAKISI---L 919

Query: 500  GDWRPTIRPVREDLHR 547
             ++R T  P   DL R
Sbjct: 920  NNFRQTPHPFNIDLCR 935


>U97196-5|AAB52458.3|  368|Caenorhabditis elegans G protein, alpha
           subunit protein14, isoform a protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 121 DPKFFPNHHERIHSTKASLKCNDL 192
           DP + PN  + +HS KA++  N +
Sbjct: 165 DPTYLPNQEDIVHSRKATMSINSI 188


>U97196-4|AAP68962.2|  408|Caenorhabditis elegans G protein, alpha
           subunit protein14, isoform b protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 121 DPKFFPNHHERIHSTKASLKCNDL 192
           DP + PN  + +HS KA++  N +
Sbjct: 205 DPTYLPNQEDIVHSRKATMSINSI 228


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 165 KGEFEVQRFEPQQADEQRRDSGSDGEGPPTPLFDDDVSMPLE 290
           K E E+  F+    DE  RD+  +     T  FDDD+ + ++
Sbjct: 60  KSEEEIHDFDMGSWDEYSRDTSGENNYHHTSSFDDDLLLEID 101


>AY008136-1|AAG32089.1|  368|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 121 DPKFFPNHHERIHSTKASLKCNDL 192
           DP + PN  + +HS KA++  N +
Sbjct: 165 DPTYLPNQEDIVHSRKATMSINSI 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,492,237
Number of Sequences: 27780
Number of extensions: 355185
Number of successful extensions: 1214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)