Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1109
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.3  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -3

Query: 493 E*QAWRGSSWNGSLSPAELNNCTTGLSPW---SASFTKIFFQNL 371
           E +AW  S     ++P  L    TGLSP+       T++F+  L
Sbjct: 244 ERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQL 287


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 548  ETAVRVLQGTARGSGPDKSQRP 613
            E A+++ +   +G+ PD SQ+P
Sbjct: 1734 EAAMKLKKRIEKGANPDLSQKP 1755


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 115 HHDPKFFPNHHERIH 159
           H+DP F P H   +H
Sbjct: 21  HNDPHFAPGHDAIVH 35


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 183 QRFEPQQADEQRRDSGSDGEGPPTPLFDDDVSMPLED 293
           Q+ +PQQ  +Q++       GP T   +DD +  +E+
Sbjct: 837 QQQQPQQQQQQQQQQQQQQRGPMT---NDDFNPNIEE 870


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 565 NTYCSFTVKIFPYW 524
           NTY  F  + FP+W
Sbjct: 230 NTYYFFLRQAFPFW 243


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 565 NTYCSFTVKIFPYW 524
           NTY  F  + FP+W
Sbjct: 230 NTYYFFLRQAFPFW 243


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 448 PAELNNCTTGLSPWSASFTKIFFQNL 371
           P ++ NCT  ++ WS    +I   +L
Sbjct: 167 PYDILNCTIHIASWSHGSNEIKLNSL 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,736
Number of Sequences: 438
Number of extensions: 4788
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)