Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1107
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        30   0.28 
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    29   0.64 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   6.0  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   6.0  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   6.0  

>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = -3

Query: 419 AIKFRTNDKIIEFSIGLW*VEALVNRLVIAILISFFAEGKRVRFQIVFVTLVQEERSVII 240
           AIK+R+ND I+   I L+    +++R++I   IS F +        V   ++    S+ +
Sbjct: 32  AIKYRSNDGILPIIITLFIFSFVISRMII-FFISLFNKNTYCELPAVADAII---NSIAL 87

Query: 239 FCLIPIFW 216
            C+I I +
Sbjct: 88  VCIIVILY 95


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = -3

Query: 572 GLIFWLEVFLARSRFRNDFSGSTGPAYFCAASSLTSL 462
           G+IF LE  LA S F + F+GS    + C+ASS+ +L
Sbjct: 230 GVIFALEQ-LASSSFPSLFTGSIWYEFLCSASSVVAL 265


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 279 NDLEPYPLALSEEGNQDGYDQTVDQRFDSPQSNGELDNLIISPEL--YGEPPAMEGLASA 452
           NDL P  +   EE NQ+G    +DQ F   Q+     N+ +  +   + EP    G   +
Sbjct: 31  NDLHP-TMFEGEESNQNGGSVLIDQAFQDIQNPNVNSNMHLENQFQHFHEPNKESGAFGS 89

Query: 453 F 455
           +
Sbjct: 90  Y 90


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 623 AWQRY*GGRSCCFLPRPPQ 679
           AW +Y  GRS  F+  PPQ
Sbjct: 589 AWTKYSDGRSKLFITAPPQ 607


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 306  LSEEGNQDG--YDQTVDQRFDSPQSNGELDNLIISPELYGEPPAMEGLASAFDLQRRK 473
            +S +G  +G  Y++ +D     P  N      IIS  +Y     M+G   A +  RR+
Sbjct: 878  ISLKGLNEGVNYEEFLDMLLSLPAENNVETFEIISDSIYANSTIMDGRRFASEFTRRR 935


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,026
Number of Sequences: 5004
Number of extensions: 55448
Number of successful extensions: 193
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)