Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1107
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0648 - 4749150-4749275,4749902-4749986,4750761-4750861,475... 29 2.7
09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204 29 3.5
08_02_1623 - 28314402-28315094 29 3.5
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 29 3.5
03_06_0156 + 32035503-32035769,32036436-32036539,32036734-320368... 29 4.7
11_02_0040 - 7665220-7666656 28 6.2
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 28 6.2
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 28 8.2
>03_01_0648 -
4749150-4749275,4749902-4749986,4750761-4750861,
4750933-4751191,4751382-4751434,4752828-4752990,
4753181-4754616
Length = 740
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +3
Query: 561 EDQAALSPIDLMTQHEAQRRXRGSGTKVGGAAAFCQDRHKKXRW 692
E + LS I +T QR RG G GG AA C H R+
Sbjct: 16 EMELLLSEIPQVTAPHGQRGGRGGGGGGGGGAAQCYGLHGPTRY 59
>09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204
Length = 403
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 126 FSLTAITAVLAVSAVPTPSNNKDGSTISEL-PENWDQTKDDNRSLFLNKSDKNDLEP 293
F L + +A + S K G T + PE+ +QTKDDN + L++ +K L P
Sbjct: 341 FGLICLLFTIAGGVLYQQSVTKKGITAPQHEPESSEQTKDDNEGIELDE-EKQSLVP 396
>08_02_1623 - 28314402-28315094
Length = 230
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Frame = +3
Query: 111 VTMLLFSLTA-ITAVLAVSAVPTP------SNNKDGSTISELPENWDQTKDDNRSLFLNK 269
+ +LL + TA A +V TP SNN +T + Q DDN +L +
Sbjct: 108 LNLLLAAATAGAPPAAATPSVATPCSTNDDSNNSSSTTHQQQLTTMLQLDDDNYTLQPSS 167
Query: 270 SDKNDLEPYPLAL--SEEGNQDGYDQTVDQRFDSPQSNGELDNLIISP 407
SD+ D E Y L +E+ +G+ + D + +L I P
Sbjct: 168 SDQEDFETYVTRLPKAEDFGLEGFQEVPLDVLDEAGGGISIWDLSICP 215
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = +3
Query: 177 PSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQR 356
P N + E E W D+++ +L+K+ + E + S+E N G +Q
Sbjct: 115 PDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELKAEYHNGERSDENNVGG--NAGEQE 172
Query: 357 FDSPQSNG 380
D P G
Sbjct: 173 VDQPPKKG 180
>03_06_0156 +
32035503-32035769,32036436-32036539,32036734-32036844,
32036923-32037073,32037614-32037888,32037998-32038211
Length = 373
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 210 ELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQR 356
+LP NW + D N + KN L EEGN D + +DQ+
Sbjct: 320 KLPSNWKRA-DANSDILNYNGPKNVCSEGGRQLQEEGNGDEWQLYLDQK 367
>11_02_0040 - 7665220-7666656
Length = 478
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -1
Query: 511 AAPAPPTFVPLPLLRRCKSNAEXXXXXXXXXXXXXGLMIRLSSSPL 374
AAP PPT P PLL+R + L+ RL + PL
Sbjct: 198 AAPPPPTSRPPPLLKRWSPEEDDDATVVLPYADVSELIERLDTPPL 243
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +3
Query: 192 DGSTISELPENWDQTKDDNRSLFLNKSDKN----DLEPYPLALSEEGNQDG 332
+GS++S P+ D T+D + ++F +K D N DL +P A+ +E G
Sbjct: 819 EGSSLSRSPQTVDTTRDGDVTMF-DKVDINKGHIDLNFHPTAVRDEERHGG 868
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 169 CRRLRTTKMAVPSVNCQKIGIKQKMITDLSS*TRVTKTIWNLTRLPSAKKEIKMAMTK 342
C R+R+ K +N + ++ ITD + ++ + I +TRLP IK A K
Sbjct: 635 CMRIRSDKSTPNDINTYRKVMRS--ITDNITEEKLLEEIHEITRLPMYADRIKQAQAK 690
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,819,241
Number of Sequences: 37544
Number of extensions: 412741
Number of successful extensions: 1246
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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