Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1107
(700 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC106950-1|AAI06951.1| 685|Homo sapiens delta-like 4 (Drosophil... 31 5.2
AY358894-1|AAQ89253.1| 685|Homo sapiens DLL4 protein. 31 5.2
AF279305-1|AAF81912.1| 653|Homo sapiens delta 4 protein. 31 5.2
AF253468-1|AAF76427.1| 685|Homo sapiens notch ligand DLL4 protein. 31 5.2
AB043894-1|BAB18581.1| 685|Homo sapiens Delta-4 protein. 31 5.2
AB036931-1|BAB16085.1| 685|Homo sapiens notch ligand delta-2 pr... 31 5.2
X16841-1|CAA34739.1| 761|Homo sapiens protein ( Human mRNA for ... 30 6.9
U63041-1|AAB04558.1| 848|Homo sapiens neural cell adhesion mole... 30 6.9
S71824-1|AAB31836.1| 848|Homo sapiens N-CAM protein. 30 6.9
BC047244-1|AAH47244.1| 858|Homo sapiens neural cell adhesion mo... 30 6.9
BC029119-1|AAH29119.1| 364|Homo sapiens NCAM1 protein protein. 30 6.9
AB209443-1|BAD92680.1| 807|Homo sapiens Neural cell adhesion mo... 30 6.9
>BC106950-1|AAI06951.1| 685|Homo sapiens delta-like 4 (Drosophila)
protein.
Length = 685
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 339 GHSHLDFLLR*GQAGKVPNRFCHSCSRREIGYHLLFDPNFLAVH*WYCHLCCS 181
G++ +D L + P R SC +E GYH L P + +H + L C+
Sbjct: 315 GYTGVDCELELSECDSNPCRNGGSCKDQEDGYHCLCPPGYYGLHCEHSTLSCA 367
>AY358894-1|AAQ89253.1| 685|Homo sapiens DLL4 protein.
Length = 685
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 339 GHSHLDFLLR*GQAGKVPNRFCHSCSRREIGYHLLFDPNFLAVH*WYCHLCCS 181
G++ +D L + P R SC +E GYH L P + +H + L C+
Sbjct: 315 GYTGVDCELELSECDSNPCRNGGSCKDQEDGYHCLCPPGYYGLHCEHSTLSCA 367
>AF279305-1|AAF81912.1| 653|Homo sapiens delta 4 protein.
Length = 653
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 339 GHSHLDFLLR*GQAGKVPNRFCHSCSRREIGYHLLFDPNFLAVH*WYCHLCCS 181
G++ +D L + P R SC +E GYH L P + +H + L C+
Sbjct: 283 GYTGVDCELELSECDSNPCRNGGSCKDQEDGYHCLCPPGYYGLHCEHSTLSCA 335
>AF253468-1|AAF76427.1| 685|Homo sapiens notch ligand DLL4 protein.
Length = 685
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 339 GHSHLDFLLR*GQAGKVPNRFCHSCSRREIGYHLLFDPNFLAVH*WYCHLCCS 181
G++ +D L + P R SC +E GYH L P + +H + L C+
Sbjct: 315 GYTGVDCELELSECDSNPCRNGGSCKDQEDGYHCLCPPGYYGLHCEHSTLSCA 367
>AB043894-1|BAB18581.1| 685|Homo sapiens Delta-4 protein.
Length = 685
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 339 GHSHLDFLLR*GQAGKVPNRFCHSCSRREIGYHLLFDPNFLAVH*WYCHLCCS 181
G++ +D L + P R SC +E GYH L P + +H + L C+
Sbjct: 315 GYTGVDCELELSECDSNPCRNGGSCKDQEDGYHCLCPPGYYGLHCEHSTLSCA 367
>AB036931-1|BAB16085.1| 685|Homo sapiens notch ligand delta-2
protein.
Length = 685
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 339 GHSHLDFLLR*GQAGKVPNRFCHSCSRREIGYHLLFDPNFLAVH*WYCHLCCS 181
G++ +D L + P R SC +E GYH L P + +H + L C+
Sbjct: 315 GYTGVDCELELSECDSNPCRNGGSCKDQEDGYHCLCPPGYYGLHCEHSTLSCA 367
>X16841-1|CAA34739.1| 761|Homo sapiens protein ( Human mRNA for a
nontransmembrane isoform of N-CAM from skeletal muscle.
).
Length = 761
Score = 30.3 bits (65), Expect = 6.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 171 PTPSNNKDGSTISELPENWDQT-KDDNRSLFLNKSDKNDLEPY-PLALSEEGNQD 329
PT S KDG I + ++ DD+ L + K DKND Y +A ++ G QD
Sbjct: 243 PTMSWTKDGEQIEQEEDDEKYIFSDDSSQLTIKKVDKNDEAEYICIAENKAGEQD 297
>U63041-1|AAB04558.1| 848|Homo sapiens neural cell adhesion
molecule CD56 protein.
Length = 848
Score = 30.3 bits (65), Expect = 6.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 171 PTPSNNKDGSTISELPENWDQT-KDDNRSLFLNKSDKNDLEPY-PLALSEEGNQD 329
PT S KDG I + ++ DD+ L + K DKND Y +A ++ G QD
Sbjct: 243 PTMSWTKDGEQIEQEEDDEKYIFSDDSSQLTIKKVDKNDEAEYICIAENKAGEQD 297
>S71824-1|AAB31836.1| 848|Homo sapiens N-CAM protein.
Length = 848
Score = 30.3 bits (65), Expect = 6.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 171 PTPSNNKDGSTISELPENWDQT-KDDNRSLFLNKSDKNDLEPY-PLALSEEGNQD 329
PT S KDG I + ++ DD+ L + K DKND Y +A ++ G QD
Sbjct: 243 PTMSWTKDGEQIEQEEDDEKYIFSDDSSQLTIKKVDKNDEAEYICIAENKAGEQD 297
>BC047244-1|AAH47244.1| 858|Homo sapiens neural cell adhesion
molecule 1 protein.
Length = 858
Score = 30.3 bits (65), Expect = 6.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 171 PTPSNNKDGSTISELPENWDQT-KDDNRSLFLNKSDKNDLEPY-PLALSEEGNQD 329
PT S KDG I + ++ DD+ L + K DKND Y +A ++ G QD
Sbjct: 243 PTMSWTKDGEQIEQEEDDEKYIFSDDSSQLTIKKVDKNDEAEYICIAENKAGEQD 297
>BC029119-1|AAH29119.1| 364|Homo sapiens NCAM1 protein protein.
Length = 364
Score = 30.3 bits (65), Expect = 6.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 171 PTPSNNKDGSTISELPENWDQT-KDDNRSLFLNKSDKNDLEPY-PLALSEEGNQD 329
PT S KDG I + ++ DD+ L + K DKND Y +A ++ G QD
Sbjct: 243 PTMSWTKDGEQIEQEEDDEKYIFSDDSSQLTIKKVDKNDEAEYICIAENKAGEQD 297
>AB209443-1|BAD92680.1| 807|Homo sapiens Neural cell adhesion
molecule 1, 120 kDa isoform precursor variant protein.
Length = 807
Score = 30.3 bits (65), Expect = 6.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 171 PTPSNNKDGSTISELPENWDQT-KDDNRSLFLNKSDKNDLEPY-PLALSEEGNQD 329
PT S KDG I + ++ DD+ L + K DKND Y +A ++ G QD
Sbjct: 324 PTMSWTKDGEQIEQEEDDEKYIFSDDSSQLTIKKVDKNDEAEYICIAENKAGEQD 378
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,526,846
Number of Sequences: 237096
Number of extensions: 2133674
Number of successful extensions: 9825
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9825
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -