Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1106
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   3.0  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   3.9  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    25   6.8  
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    25   9.0  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   9.0  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   9.0  

>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 445 FKHSTFKSF-RYCGCDSMINVDFDEATHSITRSCKLGLRVECIGLNT 582
           F +S +++  R+ G DS + +DFD ++   T    + +  + + +NT
Sbjct: 402 FHYSIYRALLRFLGMDSKMEIDFDVSSVLTTAWNGIQINEDAVNINT 448


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 269 KALGVDFILIVIICVNVSPKYGSDTLINL 355
           K LG+DF + +++C     +YGS+ L +L
Sbjct: 147 KELGIDFPVNLLMCFEGMEEYGSEGLEDL 175


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 508 FDEATHSITRSCKLGLRVE 564
           FD   HS++ SCKL L ++
Sbjct: 99  FDRVKHSVSNSCKLHLSLQ 117


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 28  APCRSTNEALARRGRHGTTV 87
           A C ST  +L R+ RHG TV
Sbjct: 420 ANCSSTKTSLWRKDRHGQTV 439


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 17  LLAAHPADQQTRLWRG 64
           L++AHP   +TR+W G
Sbjct: 250 LVSAHPFTTETRIWNG 265


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 22  RGAPCRSTNEALARRGRHGTTVAYIV 99
           +G PC+  + + ++ G+HG    +IV
Sbjct: 36  KGRPCKIVDMSTSKTGKHGHAKVHIV 61


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 22  RGAPCRSTNEALARRGRHGTTVAYIV 99
           +G PC+  + + ++ G+HG    +IV
Sbjct: 36  KGRPCKIVDMSTSKTGKHGHAKVHIV 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,665
Number of Sequences: 5004
Number of extensions: 44744
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)