Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1104
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 219 1e-57
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 218 2e-57
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 216 8e-57
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 164 3e-41
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 100 5e-22
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 7e-07
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 3e-04
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.44
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 29 1.3
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 1.3
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37) 29 1.8
SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9) 29 1.8
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 29 2.3
SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05) 28 4.1
SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2) 28 4.1
SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_6746| Best HMM Match : rve (HMM E-Value=2.4) 27 7.2
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14) 27 9.5
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39) 27 9.5
SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_11499| Best HMM Match : C1_1 (HMM E-Value=1.5) 27 9.5
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 219 bits (534), Expect = 1e-57
Identities = 99/119 (83%), Positives = 108/119 (90%)
Frame = +3
Query: 9 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 188
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 189 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV 365
MNP NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 61 MNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEV 119
Score = 40.3 bits (90), Expect = 7e-04
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +2
Query: 332 G*RQNLFSRGSQXMVLTKMKETAEAYLGXTVQNAAITV 445
G + F+ MVL KMKETAEAYLG V +A +TV
Sbjct: 134 GETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTV 171
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +2
Query: 371 MVLTKMKETAEAYLGXTVQNAAITV 445
MVL KMKETAEAYLG V +A +TV
Sbjct: 215 MVLNKMKETAEAYLGCKVTDAVVTV 239
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 218 bits (533), Expect = 2e-57
Identities = 99/126 (78%), Positives = 109/126 (86%)
Frame = +3
Query: 9 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 188
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 189 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVX 368
MNP NT+FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEIS 120
Query: 369 XWCLRK 386
L K
Sbjct: 121 SMVLTK 126
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +2
Query: 332 G*RQNLFSRGSQXMVLTKMKETAEAYLGXTVQNAAITV 445
G +++ F MVLTKMKETAEAYLG V +A +TV
Sbjct: 109 GEKKSFFPEEISSMVLTKMKETAEAYLGAKVTDAVVTV 146
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 216 bits (527), Expect = 8e-57
Identities = 98/126 (77%), Positives = 111/126 (88%)
Frame = +3
Query: 9 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 188
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 189 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVX 368
+NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+
Sbjct: 61 LNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEIS 120
Query: 369 XWCLRK 386
L K
Sbjct: 121 SMVLGK 126
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/38 (55%), Positives = 24/38 (63%)
Frame = +2
Query: 332 G*RQNLFSRGSQXMVLTKMKETAEAYLGXTVQNAAITV 445
G R+ + MVL KMKETAEAYLG V +A ITV
Sbjct: 109 GERKTFAAEEISSMVLGKMKETAEAYLGQKVTSAVITV 146
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 164 bits (399), Expect = 3e-41
Identities = 78/121 (64%), Positives = 94/121 (77%), Gaps = 1/121 (0%)
Frame = +3
Query: 27 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNN 203
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ NP N
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPEN 763
Query: 204 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVXXWCLR 383
T+FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+ L
Sbjct: 764 TVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAMVLT 823
Query: 384 K 386
K
Sbjct: 824 K 824
Score = 40.7 bits (91), Expect = 5e-04
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +2
Query: 371 MVLTKMKETAEAYLGXTVQNAAITV 445
MVLTKMKETAEAYLG V +A +TV
Sbjct: 820 MVLTKMKETAEAYLGKKVTHAVVTV 844
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 100 bits (240), Expect = 5e-22
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Frame = +3
Query: 15 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 188
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 189 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD-GGKPKIKVAYKGEDKTFFPEEV 365
+NP NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEI 149
Query: 366 XXWCLRK*RKL 398
+ ++K R +
Sbjct: 150 GGYVIKKLRTM 160
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 50.4 bits (115), Expect = 7e-07
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 192 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEV 365
N NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQV 176
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 27 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 182
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 78 GKVEIIANDQGNRTTPSYVAFTDTERLI 161
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.44
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 87 EIIANDQGNRTTPSYVAFT-DTERL 158
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 953
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 95 RQRPGQQDHSVLCCVHRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASR 265
RQ + +++ H R +R+ ++ GG +EP + R T T C+CA R
Sbjct: 267 RQSAPSRSMAIINKTHGKRHGYRKLSRDCGGRRPNEPYERTARVHTILSTDTETCFCAKR 326
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 195 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 97
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
Length = 420
Score = 29.1 bits (62), Expect = 1.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 213 RILCCWGSSPPGSWRH 166
R++CC G SP WRH
Sbjct: 395 RVVCCQGDSPSPRWRH 410
>SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9)
Length = 340
Score = 29.1 bits (62), Expect = 1.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 213 RILCCWGSSPPGSWRH 166
R++CC G SP WRH
Sbjct: 170 RVVCCQGDSPSPRWRH 185
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 371 MVLTKMKETAEAYLGXTVQNAAITV 445
+VL ++K AEA+LG V+ A ITV
Sbjct: 21 VVLEQLKADAEAFLGQAVKRAVITV 45
>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
Length = 1264
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +2
Query: 140 HRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASRHEALA 280
H R +R+ + GG +EP + R T T C+CA R+ + A
Sbjct: 421 HGERHGYRKLSRVCGGRRPNEPYERTARVHTILSTDTETCFCAKRYGSAA 470
>SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2)
Length = 451
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 277 QCFMSACTVASSNLRPMRRLASNIVLLGFIATWFLAASPMRRSVSVNAT 131
QCF+S C + S + + R+ L TW + + M S +AT
Sbjct: 169 QCFLSVCDLCCSLMTQIPRMRHTWDFLEHAPTWISSQTSMSFSAITDAT 217
>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1881
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +2
Query: 140 HRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASRH 268
H R +R+ + GG +EP + R T T C+CA R+
Sbjct: 1181 HGERHGYRKLSRVCGGRRPNEPYERTARVHTILSTDAETCFCAKRY 1226
>SB_6746| Best HMM Match : rve (HMM E-Value=2.4)
Length = 488
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 171 AKNQVAMNPNNTIFDAKRLIGRKFEDATVQAD 266
AKNQ+ NP N + + L FED+ ++ D
Sbjct: 429 AKNQIGQNPTNHAKNQRYLKSIVFEDSLIRND 460
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 111 CPGRWR*SPPSRAGRHQRKSTWY 43
C GRW S AG ++KS WY
Sbjct: 3726 CVGRWWKEIKSLAGVSEKKSRWY 3748
>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
Length = 1624
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +2
Query: 140 HRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASRH 268
H R +R+ + GG DEP + R T T C+CA ++
Sbjct: 705 HGERHGYRKLSRVCGGRRPDEPYERTARVHTILSTYAGACFCAKQY 750
>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
Length = 2865
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -1
Query: 219 WHRILCCWGSSPPGSW 172
WH + W SS GSW
Sbjct: 511 WHHVCATWNSSALGSW 526
>SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1830
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 143 RHRASHRRCRQEPGGDEPQQHNI-RCQTSHR 232
R RASHR C + P P++H + R + +H+
Sbjct: 808 RGRASHRACARAPKMPPPERHALTRLRHTHQ 838
>SB_11499| Best HMM Match : C1_1 (HMM E-Value=1.5)
Length = 572
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 113 QDHSVLCCVHRHR-ASHRRCRQEPGGDEPQQHNIRCQTSHR 232
++H+ C HR R ++ GG EPQ CQ H+
Sbjct: 340 REHANTTCFENHRRVKPRGTKKRGGGGEPQVSWSYCQRYHK 380
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,377,393
Number of Sequences: 59808
Number of extensions: 335930
Number of successful extensions: 957
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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