Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1103
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   3.2  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   3.2  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   4.2  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   7.3  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   7.3  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.7  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   9.7  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -1

Query: 202  FLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPLSYRPIALASVISKICEHLVKNR 26
            FL L+ SI+ +  +   W I   I        I   L +RP+  + +  + CEHL++++
Sbjct: 839  FLLLLISIVCNTAVLDHWDITRRIEYG-----IAHILCFRPLPYSEITKRTCEHLLEHK 892


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 157 PSWKIHEVIPIHKPNKPI 104
           P W + E   ++KPNKPI
Sbjct: 660 PDWFLDEETTVNKPNKPI 677


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 246 GIPSQPGAESLSLERTPLSSERLKEMNESLLSCWERREGCESEEILSID 392
           GIPSQ   E  S     L     +E+N S++ C    E  E E + S D
Sbjct: 53  GIPSQFSFEIDSTYAHTLKLAENQEINLSIIDCTHEIEQLEIEPVTSND 101


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 157 PSWKIHEVIPIHKPNKP-INDPLSYRPIA 74
           PS +IH ++P   P  P IND    +PI+
Sbjct: 568 PSPRIHTIVPNSAPEHPSINDYKILKPIS 596


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -1

Query: 199 LSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPLSYRPIALASVISKI 50
           +S ++S + S ++      + ++ IH+P    +   S +PI +  V S I
Sbjct: 667 ISTVDSSIGSASVVEKGVANSIVDIHQPTAKADKGNSKKPIYIGIVSSSI 716


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 306 ERLKEMNESLLSCWERREGCESEEILS 386
           ERLK + E+L S  ER   CE    LS
Sbjct: 197 ERLKSIEENLQSLQERISHCERSVSLS 223


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -2

Query: 348 PSMIVAIHSFPLAFQNSKGFFQGLGT 271
           P +++ +    + FQ+ +GF+Q + T
Sbjct: 489 PDILILLEEVDILFQDDRGFWQAVST 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,095
Number of Sequences: 5004
Number of extensions: 37417
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)