Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1103
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 44 6e-05
04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798 31 0.61
05_04_0257 + 19487757-19489070 31 0.80
11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542... 29 3.2
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 28 4.3
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 28 4.3
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 5.6
05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147... 27 7.5
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 44.4 bits (100), Expect = 6e-05
Identities = 26/82 (31%), Positives = 41/82 (50%)
Frame = -1
Query: 268 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPLS 89
+PG DG P F Q + S + + + SG +P ++ I K ++PI D
Sbjct: 908 SPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPI-DLKD 966
Query: 88 YRPIALASVISKICEHLVKNRL 23
YRPI+L +V+ K+ + NRL
Sbjct: 967 YRPISLCNVVYKVVSKCLVNRL 988
>04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798
Length = 575
Score = 31.1 bits (67), Expect = 0.61
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 267 AESLSLERTPLSSERLKEMNESLLSCWERREGCE--SEEILSID 392
AE L L T L +ERLKE+ + L+ W+ + E +EE S D
Sbjct: 310 AEDLELGYTTLQNERLKEIEKLTLTSWKETDEIENTNEEYESTD 353
>05_04_0257 + 19487757-19489070
Length = 437
Score = 30.7 bits (66), Expect = 0.80
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = -1
Query: 289 LSRLRDSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNK 110
L++ A CDG P LND+C + + + + TSGN+ I +V+ + +
Sbjct: 99 LAKTNACATSCDGAPSPAC--LNDTCGGFPENTVTHVSTSGNV-----ITDVLSLPTTFR 151
Query: 109 PINDPLSYRPIAL 71
P PL+ P L
Sbjct: 152 PAPGPLATAPAFL 164
>11_04_0401 -
17251759-17252208,17252545-17253022,17254235-17254290,
17254489-17255019
Length = 504
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/85 (22%), Positives = 37/85 (43%)
Frame = -1
Query: 262 GCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPLSYR 83
G +G P Q ++ + I +G P ++ I ++P+ D +R
Sbjct: 407 GPNGFPARIYQRNRGIMKQDIVNPVTKIFQTGLTPMGVNDTAIVLILMSDQPV-DLKDFR 465
Query: 82 PIALASVISKICEHLVKNRLEWFIE 8
PI+L +V+ K+ + NRL ++
Sbjct: 466 PISLCNVVYKVVFKCLVNRLRTVLD 490
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -1
Query: 202 FLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
F SL TSG ++ I KP K N YRPI+L + KI ++ RL
Sbjct: 951 FFSLATGFTTSGADIERINRAYIVLIQKPGKE-NTVDGYRPISLQNCSVKILSKVLATRL 1009
Query: 22 E 20
+
Sbjct: 1010 Q 1010
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 88 YRPIALASVISKICEHLVKNRLEWFI 11
+RPI+L +V+ KI ++ NRL+ F+
Sbjct: 187 FRPISLCNVLYKIASKVLANRLKLFL 212
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 175 TSGNIPPSWKIHEVIPIHKPNKPINDPLSY 86
T GN PP EV P+H NK + PLS+
Sbjct: 872 TEGNAPPGSLQGEVAPLHSRNKAM--PLSF 899
>05_06_0096 +
25513535-25514024,25514139-25514236,25514395-25514783,
25515485-25515599,25515816-25515917,25516584-25516734,
25517162-25517250,25517518-25517566,25517723-25517763,
25517929-25518116,25518285-25518402,25518900-25519079,
25519172-25519294,25519368-25519455,25519549-25519679,
25519768-25519866,25520822-25521253
Length = 960
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +3
Query: 30 FLTRCSQILEITEANAIGLYDNGSLMGLLGLCIGITSWIFHDGGILPDVKIELIKL 197
F++ C++IL + E G+ D G L + IGI S F LP VK + +L
Sbjct: 336 FVSACTRILGL-EGTPEGVEDQGRLTRVAAFPIGIDSERFKRALELPAVKRHITEL 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,232,082
Number of Sequences: 37544
Number of extensions: 221110
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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