Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1103
(550 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 89 4e-18
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 86 3e-17
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 86 3e-17
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 71 8e-13
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 71 8e-13
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 71 8e-13
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 71 8e-13
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 71 1e-12
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 69 3e-12
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 68 7e-12
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 67 1e-11
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 67 2e-11
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 66 2e-11
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 64 1e-10
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 64 2e-10
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 60 2e-09
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 60 3e-09
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 60 3e-09
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 60 3e-09
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 56 4e-08
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 56 4e-08
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 52 4e-07
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 52 4e-07
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 47 1e-05
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 42 7e-04
AY051908-1|AAK93332.1| 501|Drosophila melanogaster LD39664p pro... 29 5.5
AL021728-8|CAA16815.1| 518|Drosophila melanogaster EG:95B7.7 pr... 29 5.5
AE014298-459|AAF45821.2| 501|Drosophila melanogaster CG2712-PA ... 29 5.5
AE014296-3491|AAF51688.1| 523|Drosophila melanogaster CG10510-P... 29 5.5
AY058403-1|AAL13632.1| 523|Drosophila melanogaster GH17186p pro... 28 7.2
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 89.0 bits (211), Expect = 4e-18
Identities = 39/99 (39%), Positives = 61/99 (61%)
Frame = -1
Query: 304 ELKGVLSRLRDSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPI 125
E++ +++ + +PG D + Y L+NL+ + L + N ILT+G P +W+ +IPI
Sbjct: 441 EIENSVAKAKGKSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAIIIPI 500
Query: 124 HKPNKPINDPLSYRPIALASVISKICEHLVKNRLEWFIE 8
KPNKP +D SYRPI+L S + K E ++ RL WFI+
Sbjct: 501 SKPNKPPSDINSYRPISLLSCLGKTLEKIIAQRLTWFIK 539
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 86.2 bits (204), Expect = 3e-17
Identities = 40/87 (45%), Positives = 59/87 (67%)
Frame = -1
Query: 268 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPLS 89
+PG DGIP L+NL S +++ +++ N L +G P WKI +++PI KP KP ++P S
Sbjct: 478 SPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPES 537
Query: 88 YRPIALASVISKICEHLVKNRLEWFIE 8
YRPI+L S +SKI E L+K RL F++
Sbjct: 538 YRPISLLSGLSKILEKLIKLRLVKFLD 564
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 86.2 bits (204), Expect = 3e-17
Identities = 40/87 (45%), Positives = 59/87 (67%)
Frame = -1
Query: 268 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPLS 89
+PG DGIP L+NL S +++ +++ N L +G P WKI +++PI KP KP ++P S
Sbjct: 426 SPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPES 485
Query: 88 YRPIALASVISKICEHLVKNRLEWFIE 8
YRPI+L S +SKI E L+K RL F++
Sbjct: 486 YRPISLLSGLSKILEKLIKLRLVKFLD 512
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 71.3 bits (167), Expect = 8e-13
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = -1
Query: 304 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 369 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 428
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
I KP K +NDP SYRPI+L S +SK+ E L+ RL
Sbjct: 429 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRL 463
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 71.3 bits (167), Expect = 8e-13
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = -1
Query: 304 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 485 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 544
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
I KP K +NDP SYRPI+L S +SK+ E L+ RL
Sbjct: 545 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRL 579
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 71.3 bits (167), Expect = 8e-13
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = -1
Query: 304 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 447 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 506
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
I KP K +NDP SYRPI+L S +SK+ E L+ RL
Sbjct: 507 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRL 541
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 71.3 bits (167), Expect = 8e-13
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = -1
Query: 304 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 485 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 544
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
I KP K +NDP SYRPI+L S +SK+ E L+ RL
Sbjct: 545 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRL 579
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 70.5 bits (165), Expect = 1e-12
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = -1
Query: 304 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 485 ELNDEIKNLKNSKAPGKDLITNQLIKALPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 544
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
I KP K +NDP SYRPI+L S +SK+ E L+ RL
Sbjct: 545 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRL 579
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 69.3 bits (162), Expect = 3e-12
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = -1
Query: 304 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 485 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKM 544
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
I KP K N+P SYRPI+L S +SKI E L+ RL
Sbjct: 545 ILKPGKSANEPRSYRPISLLSGLSKIFERLLLKRL 579
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 68.1 bits (159), Expect = 7e-12
Identities = 33/82 (40%), Positives = 47/82 (57%)
Frame = -1
Query: 268 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPLS 89
+PG D + + L+ L + Y + N+IL P WK+ ++ IHKP KP P S
Sbjct: 454 SPGIDNVCNATLKALPVRAILYLALIYNAILRVQFFPKQWKMAAILMIHKPGKPEESPES 513
Query: 88 YRPIALASVISKICEHLVKNRL 23
YRPI+L S +SK+ E L+ NRL
Sbjct: 514 YRPISLLSSLSKLWERLIANRL 535
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 67.3 bits (157), Expect = 1e-11
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = -1
Query: 304 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 497 ELNEEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKM 556
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
I KP K N+P SYRPI+L S +SK+ E L+ RL
Sbjct: 557 ILKPGKSSNEPKSYRPISLLSGLSKMFERLLLKRL 591
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 66.9 bits (156), Expect = 2e-11
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = -1
Query: 304 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
E+K ++++L APG D + ++ L D L + + + NS+L G P +WK +I
Sbjct: 244 EVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLVLIFNSVLDVGYFPKAWKSASIIM 303
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
IHK K D SYRPI+L + KI E L+ NRL
Sbjct: 304 IHKTGKTPTDVDSYRPISLLPSLGKIMERLILNRL 338
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/98 (35%), Positives = 52/98 (53%)
Frame = -1
Query: 304 ELKGVLSRLRDSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPI 125
EL L L+ APG + I Y ++N + + + L N I S +IP ++K +IPI
Sbjct: 437 ELSSALQTLKGCAPGLNRISYQMIKNSSHTTKNRITKLFNEIFNS-HIPQAYKTSLIIPI 495
Query: 124 HKPNKPINDPLSYRPIALASVISKICEHLVKNRLEWFI 11
KPN SYRPI+L I+KI + ++ RL W +
Sbjct: 496 LKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLV 533
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = -1
Query: 304 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
E+K ++++L APG D + ++ L D L + + NS+L G P +WK +I
Sbjct: 442 EVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKSASIIM 501
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
IHK K D SYRP +L + KI E L+ NRL
Sbjct: 502 IHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRL 536
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 63.7 bits (148), Expect = 2e-10
Identities = 33/97 (34%), Positives = 53/97 (54%)
Frame = -1
Query: 292 VLSRLRDSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPN 113
++ + + APG D I + L+ L + Y + N+I+ P WK+ + IHKP
Sbjct: 445 IVRQSNNKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQWKLGIISMIHKPG 504
Query: 112 KPINDPLSYRPIALASVISKICEHLVKNRLEWFIESK 2
KP +P SYRPI+L ISK+ E L+ R+ +E++
Sbjct: 505 KPEREPASYRPISLLPSISKVFERLIAVRIVSIMEAQ 541
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 60.1 bits (139), Expect = 2e-09
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = -1
Query: 304 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
EL G+++ L APG D + + NL Y + + N+IL +G+ P WK +
Sbjct: 488 ELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISM 547
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
I KP K SYRPI+L S +SK+ E ++ RL
Sbjct: 548 IPKPGKSPFALNSYRPISLLSGLSKLLERILPKRL 582
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 59.7 bits (138), Expect = 3e-09
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = -1
Query: 304 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
EL G+++ L APG D + + NL Y + + N+IL +G+ P WK +
Sbjct: 41 ELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISM 100
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
I KP K SYRPI+L S +SK+ E ++ RL
Sbjct: 101 IPKPGKSPFALNSYRPISLLSGLSKLLERILLKRL 135
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 59.7 bits (138), Expect = 3e-09
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = -1
Query: 304 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
EL G+++ L APG D + + NL Y + + N+IL +G+ P WK +
Sbjct: 488 ELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISM 547
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
I KP K SYRPI+L S +SK+ E ++ RL
Sbjct: 548 IPKPGKSPFALNSYRPISLLSGLSKLLERILLKRL 582
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 59.7 bits (138), Expect = 3e-09
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = -1
Query: 304 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
EL G+++ L APG D + + NL Y + + N+IL +G+ P WK +
Sbjct: 488 ELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISM 547
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
I KP K SYRPI+L S +SK+ E ++ RL
Sbjct: 548 IPKPGKSPFALNSYRPISLLSGLSKLLERILLKRL 582
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 55.6 bits (128), Expect = 4e-08
Identities = 32/82 (39%), Positives = 42/82 (51%)
Frame = -1
Query: 268 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPLS 89
+PG D I + L S + Y L N+I G P WK+ ++I I KP K S
Sbjct: 451 SPGYDLITPEMIIQLPHSAVRYITKLFNAITKLGYFPQRWKMMKIIMIPKPGKNHTVASS 510
Query: 88 YRPIALASVISKICEHLVKNRL 23
YRPI+L S ISK+ E + RL
Sbjct: 511 YRPISLLSCISKLFEKCLLIRL 532
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 55.6 bits (128), Expect = 4e-08
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = -1
Query: 304 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
E+ R+R + APG DGIP ++ + F L G P WK +++
Sbjct: 406 EVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCLLDGVFPKRWKKMKLVL 465
Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRLEWFIES 5
+ K P N P SYRP+ L ++ K+ E ++ R+E ES
Sbjct: 466 LLKGKGPANVPRSYRPLCLLDIVGKLFERILYARIELITES 506
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/82 (34%), Positives = 41/82 (50%)
Frame = -1
Query: 268 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPLS 89
+PG D I L L + + L N+I G P WK ++ I KP K P S
Sbjct: 449 SPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSS 508
Query: 88 YRPIALASVISKICEHLVKNRL 23
YRPI+L + +SK+ E ++ R+
Sbjct: 509 YRPISLLTCLSKLFEKMLLLRI 530
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/82 (34%), Positives = 41/82 (50%)
Frame = -1
Query: 268 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPLS 89
+PG D I L L + + L N+I G P WK ++ I KP K P S
Sbjct: 449 SPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSS 508
Query: 88 YRPIALASVISKICEHLVKNRL 23
YRPI+L + +SK+ E ++ R+
Sbjct: 509 YRPISLLTCLSKLFEKMLLLRI 530
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Frame = -1
Query: 304 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
E+ ++RL+ +PG DGI + + + + + SL + + G P WK V+
Sbjct: 438 EVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVS 497
Query: 127 IHK-PNKPINDPLSYRPIALASVISKICEHLVKNRL 23
+ K P+K +P SYR I L V K+ E ++ NR+
Sbjct: 498 LLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRV 533
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = -1
Query: 193 LINSILTSGNIPPSWKIHEVIPIHKPNKPINDPLSYRPIALASVISKICE 44
L N+I G P WK +I I KP K P SYRPI+L + +SK+ E
Sbjct: 16 LFNAITKIGYFPQKWKKSIIIMIPKPEKDKTQP-SYRPISLLTCLSKLFE 64
>AY051908-1|AAK93332.1| 501|Drosophila melanogaster LD39664p
protein.
Length = 501
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 112 KPINDPLSYRPIALASVISKICEHLVKNRLEWFI 11
KP++DP+S +P LAS++S C L E F+
Sbjct: 29 KPLDDPISGKPATLASILS-YCSGLEILEAELFL 61
>AL021728-8|CAA16815.1| 518|Drosophila melanogaster EG:95B7.7
protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 112 KPINDPLSYRPIALASVISKICEHLVKNRLEWFI 11
KP++DP+S +P LAS++S C L E F+
Sbjct: 26 KPLDDPISGKPATLASILS-YCSGLEILEAELFL 58
>AE014298-459|AAF45821.2| 501|Drosophila melanogaster CG2712-PA
protein.
Length = 501
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 112 KPINDPLSYRPIALASVISKICEHLVKNRLEWFI 11
KP++DP+S +P LAS++S C L E F+
Sbjct: 29 KPLDDPISGKPATLASILS-YCSGLEILEAELFL 61
>AE014296-3491|AAF51688.1| 523|Drosophila melanogaster CG10510-PA
protein.
Length = 523
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 270 ESLSL-ERTPLSSERLKEMNESLLSCWERREGCESEEILSID 392
++L+L + ++ E L E+N+SL + W R+ E++ +L ++
Sbjct: 399 QTLNLKDHVDMTEEELVELNKSLRNFWRRQAMAEAQNLLMLE 440
>AY058403-1|AAL13632.1| 523|Drosophila melanogaster GH17186p
protein.
Length = 523
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 285 ERTPLSSERLKEMNESLLSCWERREGCESEEILSID 392
+ ++ E L E+N+SL + W R+ E++ +L ++
Sbjct: 405 DHVDMTEEELVELNKSLRNFWRRQAMAEAQNLLMLE 440
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,352,125
Number of Sequences: 53049
Number of extensions: 371753
Number of successful extensions: 920
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -