Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1103
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    54   7e-08
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    43   1e-04
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    43   1e-04
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    43   2e-04
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    35   0.044
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z68342-9|CAD91630.2|  626|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF098992-12|AAC67453.2|  328|Caenorhabditis elegans Hypothetical...    29   2.9  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
 Frame = -1

Query: 304 ELKGVLSRLRDSAP-GCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
           EL  +  ++  SA  G DGI    ++ L     S+   L N  L++  IP  WK   VI 
Sbjct: 332 ELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKANVIM 391

Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRLEWFIES 5
           I KP K      SYRPI+L S I+K+ E  +  R++  IES
Sbjct: 392 IPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIES 432


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = -1

Query: 304 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
           E++ VL    +  A G D I   FL++ +D+ +       N  L S N+P  WK  +   
Sbjct: 551 EIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTL 610

Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
           I K     N   +YRPI L  V+ K+    + NR+
Sbjct: 611 IFKKGDRENLE-NYRPICLLPVLYKVFTKCLLNRM 644


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = -1

Query: 304 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 128
           E++ VL    +  A G D I   FL++ +D+ +       N  L S N+P  WK  +   
Sbjct: 290 EIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTL 349

Query: 127 IHKPNKPINDPLSYRPIALASVISKICEHLVKNRL 23
           I K     N   +YRPI L  V+ K+    + NR+
Sbjct: 350 IFKKGDRENLE-NYRPICLLPVLYKVFTKCLLNRM 383


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 26/82 (31%), Positives = 38/82 (46%)
 Frame = -1

Query: 268 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPLS 89
           A G D I   FL++ +D+ +       N  L S N+P  WK  +   I K     N   +
Sbjct: 393 AAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLE-N 451

Query: 88  YRPIALASVISKICEHLVKNRL 23
           YRPI L  V+ K+    + NR+
Sbjct: 452 YRPICLLPVLYKVFTKCLLNRM 473


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 34.7 bits (76), Expect = 0.044
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -1

Query: 268 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHK 119
           A G D I   FL++  D  +       N  L SGNIP  WK  +   I K
Sbjct: 413 AAGSDKITADFLKSCGDYVIRLITGRFNRYLESGNIPKDWKTSKTTLIFK 462


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 300 SSERLKEMNESLLSCWERREGCESEEILSIDGTNGGAN 413
           S  R K +N+SLLS  + +E  E+ + L IDG N   N
Sbjct: 30  SPTRQKSINKSLLSLDKTQEFSETSQKLKIDGENRSEN 67


>Z68342-9|CAD91630.2|  626|Caenorhabditis elegans Hypothetical
           protein F38E11.12 protein.
          Length = 626

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 21  SSLFLTRCSQILEITEANAIGLYDNGSLMGLLGL 122
           SS+F+  C Q++EITE N I  ++ G ++G + L
Sbjct: 465 SSMFIIVCGQMVEITEDNEIDHFE-GEILGDVNL 497


>AF098992-12|AAC67453.2|  328|Caenorhabditis elegans Hypothetical
           protein F53C3.1 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -1

Query: 220 DSCLSYFLSLINSILTSGNIPPSWKI-HEVIPIHKPNKPINDPLSYRPIALASVISKICE 44
           D C S+F  LI+ IL  G      K+ +EV+ I +  +  N    Y+ I   S ++KI +
Sbjct: 213 DDCESWFYLLIDLILEGGLPWRHCKVKNEVLKIKENTRKDNRAALYKGIPQTSELNKILD 272

Query: 43  HL 38
           ++
Sbjct: 273 YI 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,630,179
Number of Sequences: 27780
Number of extensions: 197662
Number of successful extensions: 468
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)