Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1103
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    25   0.67 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.2  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 214 RSRSGFEEKNMEFHHNPGLS 273
           R   G   +NM+  H+PGL+
Sbjct: 40  RCMGGINSRNMDIEHDPGLA 59


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 102 LMGLLGLCIGITSWIFHDGGILPDVKIELIKLR 200
           L+G   +CI I   +  D G+  D   + I L+
Sbjct: 303 LLGKRNICIAIKEKLVKDSGVAKDAAYDNIVLK 335


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -1

Query: 127 IHKPNKPINDPLSYRPIAL 71
           +H+ N P+ D +   P+ L
Sbjct: 229 VHEENSPLEDNIKCEPLEL 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,967
Number of Sequences: 438
Number of extensions: 2573
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)