Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1103
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con...    30   1.2  
At4g00150.1 68417.m00015 scarecrow-like transcription factor 6 (...    29   2.0  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    28   3.6  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    28   3.6  
At2g45160.1 68415.m05622 scarecrow transcription factor family p...    28   3.6  
At5g62560.1 68418.m07851 armadillo/beta-catenin repeat family pr...    27   6.2  
At4g21210.1 68417.m03066 expressed protein contains Pfam domain ...    27   6.2  

>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
           contains similarity to SKP1 interacting partner 2
           GI:10716949 from [Arabidopsis thaliana]; contains Pfam
           PF00646: F-box domain
          Length = 554

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 292 VLSRLRDSAPGCDGIPYSFLQNLNDSCLS 206
           VL  LR+   G D  PY ++ NL D CLS
Sbjct: 56  VLPNLREQNSGADE-PYDYISNLPDECLS 83


>At4g00150.1 68417.m00015 scarecrow-like transcription factor 6
           (SCL6)
          Length = 558

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 267 AESLSLERTPLSSERLKEMNESLLSCWERRE 359
           AE L ++RTP+    +++ + SLL CW+R E
Sbjct: 517 AECL-VQRTPVRGFHVEKKHNSLLLCWQRTE 546


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -1

Query: 169  GNIPPSWK---IHEVIPIHKPNKPINDPLSYRPIALASVISKICEHLVKN 29
            GN P  W    + E  P++K  KP+ND  +     +  + +  C   ++N
Sbjct: 953  GNDPDIWADLVVFEFFPVNKQRKPLNDSCTVTRCGVRLITAVNCNTSIEN 1002


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -1

Query: 169  GNIPPSWK---IHEVIPIHKPNKPINDPLSYRPIALASVISKICEHLVKN 29
            GN P  W    + E  P++K  KP+ND  +     +  + +  C   ++N
Sbjct: 981  GNDPDIWADLVVFEFFPVNKQRKPLNDSCTVTRCGVRLITAVNCNTSIEN 1030


>At2g45160.1 68415.m05622 scarecrow transcription factor family
           protein 
          Length = 640

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 267 AESLSLERTPLSSERLKEMNESLLSCWERRE 359
           AE L L+R P+    +++   SL+ CW+R+E
Sbjct: 602 AECL-LQRNPVRGFHVEKRQSSLVMCWQRKE 631


>At5g62560.1 68418.m07851 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 559

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 246 GIPSQPGAESLSLERTPLSSERLKEMNESLLSCWERREGCESE 374
           G+ S+ GAE + +E     +ER+KE    +L       G ESE
Sbjct: 479 GLASEAGAEEVLMEVEENGNERVKEKASKILLAMRGGGGGESE 521


>At4g21210.1 68417.m03066 expressed protein contains Pfam domain
           PF03618: Domain of unknown function (DUF299)
          Length = 403

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 255 SQP-GAESLSLERTPLSSERLKEMNESLLSCWERREGCESEEILSIDGTNGGAN 413
           S+P G++S+SL  +   SER      S L+ W R     S   L    TNG  N
Sbjct: 24  SKPAGSDSVSLNASEPGSERKPRKFSSQLNRWNRARTLRSGAKLDSTITNGSNN 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,210,083
Number of Sequences: 28952
Number of extensions: 190432
Number of successful extensions: 537
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)