Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1102
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 29 0.64
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 28 1.1
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 28 1.1
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 28 1.1
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 1.1
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 28 1.5
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 28 1.5
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 28 1.5
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 27 2.6
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 27 3.4
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 4.5
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 4.5
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 4.5
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 26 4.5
SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom... 26 6.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 6.0
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 25 7.9
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 7.9
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 25 7.9
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 29.1 bits (62), Expect = 0.64
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = -3
Query: 248 LFHCFFLYSLICFLSSMFKSFQCGMILLH 162
L +C+++YS + +SS F+SF G ++++
Sbjct: 52 LLYCWYIYSEVPSVSSKFRSFTFGCVVVY 80
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 248 LFHCFFLYSLICFLSSMFKSFQCGMILLH 162
L +C+++YS + SS F+SF G ++++
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVY 80
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 248 LFHCFFLYSLICFLSSMFKSFQCGMILLH 162
L +C+++YS + SS F+SF G ++++
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVY 80
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 491 KSFRKCRTTERRNKAQQKYENDEIPYQILNITKQKTDDEDNYQG 622
K R+C +R + Q+ N E P + NI + D +Y G
Sbjct: 111 KKLRECEQLVKRIRFQEAIHNTEPPSPLANINIEDMDIPSDYDG 154
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 248 LFHCFFLYSLICFLSSMFKSFQCGMILLH 162
L +C+++YS + SS F+SF G ++++
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVY 80
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 139 RDLAWEDICKRII-PHWNDLNMEDRKQIREYKKKQWNNVRDGYR 267
RD AW+ +C I P +++ Q + K W NVR YR
Sbjct: 478 RDDAWDFVCHCITDPKDRFCSLKQVMQHPYFSKIDWKNVRTAYR 521
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +1
Query: 40 IVKMTEIEELISEVERNPCLWNVGCSNYQNKTQRDLAWEDI---CKRIIPHWNDLNMEDR 210
+VK E E ++ + P QN +DL + + C +IP W D E+
Sbjct: 281 VVKQAEAEVAVNPISAYPLAKVCLLLQTQNADLKDLLFARLQKNCPWVIPFWYDHGTENG 340
Query: 211 KQIREYKK 234
K+ +KK
Sbjct: 341 KKKMGFKK 348
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 27.9 bits (59), Expect = 1.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 313 FFFGHRRCFYFYLGTFCNHLLHCST 239
+F+ + ++FYL C H H +T
Sbjct: 219 YFYARQNQYFFYLDPHCTHFAHTTT 243
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 103 NVGCSNYQNKTQRDLAWE---DICKRIIPHWNDLNMEDRKQIREYKKKQWNNVRD 258
N+G +++ +T DL E ++ PH + RK+ R KKK ++V D
Sbjct: 69 NIGANSFSAETPVDLKKENETELANISGPHKKSTSTSTRKRARSSKKKATDSVSD 123
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 163 CKRIIPHWNDLNMED 207
CK PHWNDL+ D
Sbjct: 403 CKPFEPHWNDLSPHD 417
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Frame = +1
Query: 133 TQRDLAWEDICKRII---PH---WNDLNMEDRKQIREYKKKQWNNV 252
T+ +L +++ R++ PH W+++ + R Q+ E+ KK+W ++
Sbjct: 163 TEPELQDQELLPRLLKANPHQQGWSNMMLYLRYQVEEFAKKKWGSM 208
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 331 IIPVYEFFFGHRRCFYFYLGTFCNHLLH 248
++ +Y F G+ +C Y YLG F H H
Sbjct: 437 LLSLYHFLTGNFKCAYSYLG-FAIHSAH 463
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +1
Query: 112 CSNYQNKTQRDLAWEDICKRIIP---HWNDLNMEDRKQIREYKKKQWNNVRDGYRKYLNR 282
C NY + LA E + K ++ W + + E ++++REYKK W + + K + +
Sbjct: 1095 CFNYDRQECEYLA-EIVFKTLVEKEREWRENSEEWKEKMREYKK--WQSTANQRAKQMEK 1151
Query: 283 NKNTSGAQKK 312
+ ++ ++K
Sbjct: 1152 FEKSATEKQK 1161
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 160 ICKRIIPHWNDLN-MEDRKQIREYKKKQWNNVRDGYRKYLNRNKNTSGAQKK 312
I +R++ + L+ EDR IRE K ++ + R +RK + + T+ QKK
Sbjct: 291 IVERMVRQGSTLSHSEDRFTIREKKVRELLSGRYDFRKVEDDHSTTASDQKK 342
>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 79
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 202 EDRKQIREYKKKQWNNVRDGYRKYLNRNKNTSGAQKK 312
E ++ E +K NVR GY+ ++ N N SG K+
Sbjct: 34 EHEGEVGEEHQKNTGNVRGGYKAAMH-NPNVSGEAKQ 69
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 184 WNDLNMEDRKQIREYKKKQWNNVRDGYRKYLNRNKNTSGAQK 309
W+ N E+R+QIRE+ W ++ + R+ L + + + QK
Sbjct: 251 WSSSNTEEREQIREF----WLSLSESERRSLVKVEKEAVLQK 288
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 239 CFFLYSLICFLSSMFKSFQCGMILLHIS 156
CFFLYSL+ + FQ +I++H+S
Sbjct: 292 CFFLYSLLTPFFDIHLQFQ--LIVMHMS 317
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 298 RRCFYFYLGTFCNHLLHCSTVSFYI 224
R F FY F NH+ H S +SF++
Sbjct: 583 RSSFIFYC-IFPNHIQHSSGISFFV 606
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 40 IVKMTEIEELISEVERNPCLWNVGCSNYQNKTQRDLAWEDICKRIIPHWNDLNMEDRKQI 219
+VK+ ++E+++ + C V Q +DL ++ + I HW DL + D + I
Sbjct: 118 LVKLAGLDEIVTIMIGKACDSLVELQ--QKLLHKDLGFQALDMVFIDHWKDLYVPDLRVI 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,694
Number of Sequences: 5004
Number of extensions: 56604
Number of successful extensions: 173
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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