Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1102
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0081 + 22248963-22249016,22249120-22249165,22249259-222493...    33   0.16 
06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979           31   0.67 

>05_05_0081 +
           22248963-22249016,22249120-22249165,22249259-22249357,
           22250178-22250337,22250858-22251128,22251295-22251486
          Length = 273

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 299 PEVFLFLFRYF-L*PSLTLFHCFFLYSLICFL 207
           P +F FLF+YF   PSL  F C + YSL  F+
Sbjct: 176 PAIFFFLFQYFGSRPSLVRFWCMWGYSLFIFI 207


>06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979
          Length = 361

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 181 HWNDLNMEDRKQIREYKKKQWNNV 252
           HW DLN+E++K+ R+  K ++N +
Sbjct: 309 HWGDLNLEEKKRTRKELKAEYNEL 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,404,785
Number of Sequences: 37544
Number of extensions: 321155
Number of successful extensions: 733
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)